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Namespace "/Users/joan/devel/rcsb-saguaro-3d/node_modules/molstar/lib/mol-model/structure/model/properties/atomic"

Index

Type aliases

Variables

AtomicNumbers: {}

Type declaration

  • [e: string]: number | undefined
AtomsSchema: { auth_atom_id: <internal>.Column.Schema.Str; auth_comp_id: <internal>.Column.Schema.Str; label_alt_id: <internal>.Column.Schema.Str; label_atom_id: <internal>.Column.Schema.Str; label_comp_id: <internal>.Column.Schema.Str; pdbx_formal_charge: <internal>.Column.Schema.Int; type_symbol: <internal>.Column.Schema.Aliased<<internal>.ElementSymbol> }

Type declaration

  • auth_atom_id: <internal>.Column.Schema.Str

    An alternative identifier for label_atom_id that may be provided by an author in order to match the identification used in the publication that describes the structure.

  • auth_comp_id: <internal>.Column.Schema.Str

    An alternative identifier for atom_site.label_comp_id that may be provided by an author in order to match the identification used in the publication that describes the structure.

  • label_alt_id: <internal>.Column.Schema.Str

    A component of the identifier for this atom site. Identifies an alternative conformation for this atom site.

  • label_atom_id: <internal>.Column.Schema.Str

    A component of the identifier for this atom site. This is a standardized name for the atom within its residue. For mmCIF files, this points to chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.

  • label_comp_id: <internal>.Column.Schema.Str

    A component of the identifier for this atom site. For mmCIF files, this points to chem_comp.id in the CHEM_COMP category.

  • pdbx_formal_charge: <internal>.Column.Schema.Int

    The net integer charge assigned to this atom. This is the formal charge assignment normally found in chemical diagrams.

  • type_symbol: <internal>.Column.Schema.Aliased<<internal>.ElementSymbol>

    The chemical element of this atom site. For mmCIF files, this points to atom_type.symbol in the ATOM_TYPE category.

ChainsSchema: { auth_asym_id: <internal>.Column.Schema.Str; label_asym_id: <internal>.Column.Schema.Str; label_entity_id: <internal>.Column.Schema.Str }

Type declaration

  • auth_asym_id: <internal>.Column.Schema.Str

    An alternative identifier for atomsite.label_asym_id that may be provided by an author in order to match the identification used in the publication that describes the structure.

  • label_asym_id: <internal>.Column.Schema.Str

    A component of the identifier for this atom site. For mmCIF files, this points to struct_asym.id in the STRUCT_ASYM category.

  • label_entity_id: <internal>.Column.Schema.Str

    For mmCIF files, this points to _entity.id in the ENTITY category.

DefaultAtomNumber: 0 = 0
DefaultAtomWeight: 10.81 = 10.81
DefaultVdwRadius: 1.7 = 1.7
ElementAtomWeights: {}

Type declaration

  • [e: number]: number | undefined
ElementVdwRadii: {}

Type declaration

  • [e: number]: number | undefined
ResiduesSchema: { auth_seq_id: <internal>.Column.Schema.Int; group_PDB: <internal>.Column.Schema.Aliased<"ATOM" | "HETATM">; label_seq_id: <internal>.Column.Schema.Int; pdbx_PDB_ins_code: <internal>.Column.Schema.Str }

Type declaration

  • auth_seq_id: <internal>.Column.Schema.Int

    An alternative identifier for atom_site.label_seq_id that may be provided by an author in order to match the identification used in the publication that describes the structure.

  • group_PDB: <internal>.Column.Schema.Aliased<"ATOM" | "HETATM">

    The group of atoms to which the atom site belongs. This data item is provided for compatibility with the original Protein Data Bank format, and only for that purpose.

  • label_seq_id: <internal>.Column.Schema.Int

    For mmCIF files, this points to entity_poly_seq.num in the ENTITY_POLY_SEQ category.

  • pdbx_PDB_ins_code: <internal>.Column.Schema.Str

    PDB insertion code.

Functions

  • Parameters

    Returns number

  • Parameters

    Returns number

  • Parameters

    Returns number

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