compares Mol* port of DSSP (with default parameters) to the BioJava implementation

### pdb:1pga ###
# turns #
Mol*: ----------------------TTTTTTTTTTTTTTTT--------TTTT------
53 turns, 18 openings
DSSP: ----------------------TTTTTTTTTTTTTTTT--------TTTT------
53 turns, 18 openings

# bends #
Mol*: ---------SS---------SSSSSSSSSSSSSSSSSS--------SSS-------
23 bends
DSSP: ---------SS---------SSSSSSSSSSSSSSSSSS--------SSS-------
23 bends

# helices #
Mol*: ----------------------HHHHHHHHHHHHHHTT--------TTTT------
44 helix elements - 0 3-10, 44 alpha, 0 pi
DSSP: ----------------------HHHHHHHHHHHHHHTT--------TTTT------
44 helix elements - 0 3-10, 44 alpha, 0 pi

# all #
Mol*: -EEEEEEE-SS-EEEEEEE-SSHHHHHHHHHHHHHHTT---EEEEETTTTEEEEE-
DSSP: -EEEEEEE-SS-EEEEEEE-SSHHHHHHHHHHHHHHTT---EEEEETTTTEEEEE-


### pdb:1bta ###
# turns #
Mol*: ------TTT---TTTTTTTTTTTTT--TT----TTTTTTTTTTT-----------TTTTTTTTT--TTTTTTTTTTTTTTT--------
127 turns, 44 openings
DSSP: ------TTT---TTTTTTTTTTTTT--TT----TTTTTTTTTTT-----------TTTTTTTTT--TTTTTTTTTTTTTTT--------
127 turns, 44 openings

# bends #
Mol*: ------SSS--SSSSSSSSSSSSS---SS---SSSSSSSSSSSSS-SS------SSSSSSSSSSSSSSSSSSSSSSSSSSS--------
60 bends
DSSP: ------SSS--SSSSSSSSSSSSS---SS---SSSSSSSSSSSSS-SS------SSSSSSSSSSSSSSSSSSSSSSSSSSS--------
60 bends

# helices #
Mol*: ------TTT---HHHHHHHHHHHHT--TT----HHHHHHHHTTT-----------TTHHHHTTT--HHHHHHHHHHHHHTT--------
100 helix elements - 0 3-10, 100 alpha, 0 pi
DSSP: ------TTT---HHHHHHHHHHHHT--TT----HHHHHHHHTTT-----------TTHHHHTTT--HHHHHHHHHHHHHTT--------
100 helix elements - 0 3-10, 100 alpha, 0 pi

# all #
Mol*: -EEEEETTT--SHHHHHHHHHHHHT--TT---SHHHHHHHHTTTS-SSEEEEEESTTHHHHTTTSSHHHHHHHHHHHHHTT--EEEEE-
DSSP: -EEEEETTT--SHHHHHHHHHHHHT--TT---SHHHHHHHHTTTS-SSEEEEEESTTHHHHTTTSSHHHHHHHHHHHHHTT--EEEEE-


### pdb:1acj ###
# turns #
Mol*: -------TT----------TT----------------TTTTT----------------------------TTTT-TTTTTT----------------------------------TTT------TTT-TTTTTTTTT-----------TTTT---TT-------TTTTTTTTTTTTTTTTTTTTT--TT-------TTTTTTTTTTTT-TTTTTT----------TT-TT----TTTTTTTTTTTTTTTT-----TTTTTTTTTT--TTTTTTTTTTT-----------------------TTTTTTTT----------------TTTTTTT-TT--TT------TTTTTTTTTTTTTT--TTTTTTTTTTT--TTTTT-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-------------TT----TTT---TTTTTTTTTTTTT-TTT---TTTTTTTTTTTTTTTTTTTT--------------------------------TTTTTTTTTTTTTTTTTTT-
614 turns, 223 openings
DSSP: -------TT----------TT----------------TTTTT------------------------------TT-TTTTTT----------------------------------TTT------TTT-TTTTTTTTT-----------TTTT---TT-------TTTTTTTTTTTTTTTTTTTTT--TT-------TTTTTTTTTTTT-TTTTTT----------TT-TT----TTTTTTTTTTTTTTTT-----TTTTTTTTTT--TTTTTTTTTTT-----------------------TTTTTTTT----------------TTTTTTT-TT--TT------TTTTTTTTTTT-TT--TTTTTTTTTTT--TTTTT-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-------------TT----TTT---TTTTTTTTTTTTT-TTT---TTTTTTTTTTTTTTTTTTTT--------------------------------TTTTTTTTTTTTTTTTTTT-
606 turns, 220 openings

# bends #
Mol*: --S----SS----------SSS----------S----SS-SSS--------SS-----S-----------SSSS-SSSSSSS--S---S----------SS--SS---------SSSS---S-SSSS--SSSSSSS-----------SSSS----SS-SSS-S-SSSSSSSSSSSSSSSSSSSSS--SSS------SSSSSSSSSSSS-SSSSSS-S----SS--SSSSSS---SSSSSSSSSSSSSSS----S-SSSSSSSSSSS-SSSSSSSSSS--SS--SS--S------SSSSSS-SSSSSSS--S--S-------S--SSSSSSSSSSS--SSS-----SSSSSSSSSSS-SS--SSSSSSSSSSS--SSSSS-SSSSSSSSSSSSSSSSS----SSSSSSSSSSSS-----------SS--S-SSS-S-SS-SSSSSS--SS-SSS---SSSSSSSSSSSSSSSSSSSSSSSS---------SSS------SSSS----SSSS-S----SSSSSSSSSS--
305 bends
DSSP: --S----SS----------SSS----------S----SS-SSS--------SS-----S-----------SSSS-SSSSSSS--S---S----------SS--SS---------SSSS---S-SSSS--SSSSSSS-----------SSSS----SS-SSS-S-SSSSSSSSSSSSSSSSSSSSS--SSS------SSSSSSSSSSSS-SSSSSS-S----SS--SSSSSS---SSSSSSSSSSSSSSS----S-SSSSSSSSSSS-SSSSSSSSSS--SS--SS--S------SSSSSS-SSSSSSS--S--S-------S--SSSSSSSSSSS--SSS-----SSSSSSSSSSS-SS--SSSSSSSSSSS--SSSSS-SSSSSSSSSSSSSSSSS----SSSSSSSSSSSS-----------SS--S-SSS-S-SS-SSSSSS--SS-SSS---SSSSSSSSSSSSSSSSSSSSSSSS---------SSS------SSSS----SSSS-S----SSSSSSSSSS--
305 bends

# helices #
Mol*: -------TT----------TT----------------GGGTT----------------------------TTTT-HHHHTT----------------------------------TTT------GGG-THHHHHHHT-----------HHHH---TT-------HHHHHHHHHHHHHHHHGGGGT--TT-------THHHHHHHHHHH-HHHHTT----------TT-TT----HHHHHHHHHHHHHHTT-----HHHHHHHHHH--HHHHHHHHGGG-----------------------HHHHHHHT----------------HHHHHHH-TT--TT------HHHHHHHHHHHTTT--HHHHHHHHHHH--GGGTT-HHHHHHHHHHHHHHHHTHHHHHHHHHHHHTT-------------TT----GGG---TTTTHHHHTTGGG-GGG---HHHHHHHHHHHHHHHHHHHT--------------------------------TTHHHHHHHHTHHHHHHHH-
523 helix elements - 27 3-10, 496 alpha, 0 pi
DSSP: -------TT----------TT----------------GGGTT------------------------------TT-HHHHTT----------------------------------TTT------GGG-THHHHHHHT-----------HHHH---TT-------HHHHHHHHHHHHHHHHGGGGT--TT-------THHHHHHHHHHH-HHHHTT----------TT-TT----HHHHHHHHHHHHHHTT-----HHHHHHHHHH--HHHHHHHHGGG-----------------------HHHHHHHT----------------HHHHHHH-TT--TT------HHHHHHHHHHH-TT--HHHHHHHHHHH--GGGTT-HHHHHHHHHHHHHHHHTHHHHHHHHHHHHTT-------------TT----GGG---TTTTHHHHTTGGG-GGG---HHHHHHHHHHHHHHHHHHHT--------------------------------TTHHHHHHHHTHHHHHHHH-
523 helix elements - 27 3-10, 496 alpha, 0 pi

# all #
Mol*: --SEEEETTEEEE-EEEEETTEEEEEEEEEE-EE---GGGTTS--EE----SSEEE--S---B-------TTTT-HHHHTTS--S-B-S---EEEEEE-SS--SSEEEEEEE--STTT---S-SGGG-THHHHHHHT-EEEE-----SHHHH---TT-SSS-S-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHH-HHHHTT-SEEEEES--TTSTTSEEEHHHHHHHHHHHHHHTT---S-HHHHHHHHHHS-HHHHHHHHGGG-SS--SS--S--EEE-SSSSSS-HHHHHHHT-S--S-EEEEEESB-SHHHHHHHSTT--TTS-----HHHHHHHHHHHTTT--HHHHHHHHHHH--GGGTT-HHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTSS-EEEEEE----TT--S-GGG-SBTTTTHHHHTTGGG-GGG---HHHHHHHHHHHHHHHHHHHTSSSS---------SSS-EEEEESSSS--EEESTTHHHHHHHHTHHHHHHHH-
DSSP: --SEEEETTEEEE-EEEEETTEEEEEEEEEE-EE---GGGTTS--EE----SSEEE--S---B-------SSTT-HHHHTTS--S-B-S---EEEEEE-SS--SSEEEEEEE--STTT---S-SGGG-THHHHHHHT-EEEE-----SHHHH---TT-SSS-S-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHH-HHHHTT-SEEEEES--TTSTTS-EEHHHHHHHHHHHHHHTT---S-HHHHHHHHHHS-HHHHHHHHGGG-SS--SS--S---EE-SSSSSS-HHHHHHHT-S--S-EEEEEESB-SHHHHHHHSTT--TTS-----HHHHHHHHHHH-TT--HHHHHHHHHHH--GGGTT-HHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTSS-EEEEEE----TT--S-GGG-SBTTTTHHHHTTGGG-GGG---HHHHHHHHHHHHHHHHHHHTSSSS---------SSS-EEEEESSSS--EEESTTHHHHHHHHTHHHHHHHH-

TODO fix mismatches                                                   e.g. here
TODO move to spec.ts once tests are running