Issue #805: tmdet membrane orientation preset applied - still needs some transformation

src/tmdet-extension/behavior.ts

@@ -41,7 +41,7 @@ import { DebugUtil } from './debug-utils';
 
 const Tag = MembraneOrientation.Tag;
 const TMDET_MEMBRANE_ORIENTATION = 'TMDET Membrane Orientation';
-const TMDET_STRUCTURE_PRESET_ID = 'tmdet-preset-membrane-orientation';
+export const TMDET_STRUCTURE_PRESET_ID = 'tmdet-preset-membrane-orientation';
 
 export const TMDETMembraneOrientation = PluginBehavior.create<{ autoAttach: boolean }>({
     name: 'tmdet-membrane-orientation-prop',
@@ -166,6 +166,8 @@ export async function registerRegionDescriptor(plugin: PluginUIContext, url: str
     const pdbtmDescriptor: PDBTMDescriptor = await downloadRegionDescriptor(plugin, params);
     pdbtmDescriptor.side1 = side1;
     TmDetDescriptorCache.add(pdbtmDescriptor);
+    membraneOrientation = createMembraneOrientation(pdbtmDescriptor);
+    DebugUtil.log('TMDET Membrane Orientation Params:', membraneOrientation);
 }
 
 async function downloadRegionDescriptor(plugin: PluginUIContext, params: any): Promise<any> {

src/tmdet-extension/debug-utils.ts

@@ -35,6 +35,7 @@ export namespace DebugUtil {
     //
     export function enableLog() {
         logEnabled = true;
+        console.log('DebugUtil Enabled', logEnabled);
     }
 
     export function disableLog() {

src/tmdet-extension/representation.ts

@@ -68,12 +68,12 @@ export function getMembraneOrientationParams(ctx: ThemeRegistryContext, structur
 
 export type MembraneOrientationRepresentation = StructureRepresentation<MembraneOrientationParams>
 export function MembraneOrientationRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, MembraneOrientationParams>): MembraneOrientationRepresentation {
-    return Representation.createMulti('Membrane Orientation', ctx, getParams, StructureRepresentationStateBuilder, MembraneOrientationVisuals as unknown as Representation.Def<Structure, MembraneOrientationParams>);
+    return Representation.createMulti('TMDET Membrane Orientation', ctx, getParams, StructureRepresentationStateBuilder, MembraneOrientationVisuals as unknown as Representation.Def<Structure, MembraneOrientationParams>);
 }
 
 export const MembraneOrientationRepresentationProvider = StructureRepresentationProvider({
     name: 'tmdet-membrane-orientation',
-    label: 'Membrane Orientation',
+    label: 'TMDET Membrane Orientation',
     description: 'Displays a grid of points representing membrane layers.',
     factory: MembraneOrientationRepresentation,
     getParams: getMembraneOrientationParams,
@@ -88,7 +88,7 @@ export const MembraneOrientationRepresentationProvider = StructureRepresentation
 });
 
 function membraneLabel(data: Structure) {
-    return `${lociLabel(Structure.Loci(data))} | Membrane Orientation`;
+    return `${lociLabel(Structure.Loci(data))} | TMDET Membrane Orientation`;
 }
 
 function getBilayerRims(ctx: RuntimeContext, data: Structure, props: BilayerRimsProps, shape?: Shape<Lines>): Shape<Lines> {

src/viewer/helpers/preset.ts

@@ -47,6 +47,7 @@ import {
 } from 'molstar/lib/extensions/rcsb/assembly-symmetry/prop';
 import { Task } from 'molstar/lib/mol-task';
 import { PLDDTConfidenceColorThemeProvider } from 'molstar/lib/extensions/model-archive/quality-assessment/color/plddt';
+import { TMDET_STRUCTURE_PRESET_ID } from '../../tmdet-extension/behavior';
 
 type BaseProps = {
     assemblyId?: string
@@ -282,6 +283,8 @@ export const RcsbPreset = TrajectoryHierarchyPresetProvider({
             //representation = await plugin.builders.structure.representation.applyPreset(structureProperties!, 'auto', presetParams);
             representation = await plugin.builders.structure.representation.applyPreset(
                 structureProperties!, 'auto', { theme: { globalName: 'tmdet-custom-color-theme' } });
+            await plugin.builders.structure.hierarchy.applyPreset(
+                trajectory, 'default', { representationPreset: TMDET_STRUCTURE_PRESET_ID as any });
         }
 
         console.log('STRUCTURE REPRESENTATION:', representation);