Renamed "common" to "mol-base"

src/mol-data/_spec/atom-set.spec.ts

@@ -4,8 +4,8 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 
-import IntTuple from '../../common/collections/int-tuple'
+import IntTuple from '../../mol-base/collections/int-tuple'
-import OrderedSet from '../../common/collections/ordered-set'
+import OrderedSet from '../../mol-base/collections/ordered-set'
 import AtomSet from '../atom-set'
 
 describe('atom set', () => {

src/mol-data/atom-set.ts

@@ -4,11 +4,11 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 
-import OrderedSet from '../common/collections/ordered-set'
+import OrderedSet from '../mol-base/collections/ordered-set'
-import Iterator from '../common/collections/iterator'
+import Iterator from '../mol-base/collections/iterator'
-import IntTuple from '../common/collections/int-tuple'
+import IntTuple from '../mol-base/collections/int-tuple'
-import { sortArray } from '../common/collections/sort'
+import { sortArray } from '../mol-base/collections/sort'
-import { hash1 } from '../common/collections/hash-functions'
+import { hash1 } from '../mol-base/collections/hash-functions'
 
 /** A map-like representation of integer set */
 interface AtomSet { '@type': 'atom-set' }

src/mol-data/structure/model.ts

@@ -6,7 +6,7 @@
 
 import * as Data from './data'
 import { Selectors } from './selectors'
-import { Vec3, Mat4 } from '../../common/math/linear-algebra'
+import { Vec3, Mat4 } from '../../mol-base/math/linear-algebra'
 
 let _uid = 0;
 /** Model-related unique identifiers */

src/mol-io/reader/cif/binary/parser.ts

@@ -9,7 +9,7 @@ import * as Encoding from './encoding'
 import Field from './field'
 import Result from '../../result'
 import decodeMsgPack from '../../../utils/msgpack/decode'
-import Computation from '../../../../common/computation'
+import Computation from '../../../../mol-base/computation'
 
 function checkVersions(min: number[], current: number[]) {
     for (let i = 0; i < 2; i++) {

src/mol-io/reader/cif/text/parser.ts

@@ -26,7 +26,7 @@ import * as Data from '../data-model'
 import Field from './field'
 import { Tokens, TokenBuilder } from '../../common/text/tokenizer'
 import Result from '../../result'
-import Computation from '../../../../common/computation'
+import Computation from '../../../../mol-base/computation'
 
 /**
  * Types of supported mmCIF tokens.

src/mol-io/reader/common/text/tokenizer.ts

@@ -6,7 +6,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 
-import Computation from '../../../../common/computation'
+import Computation from '../../../../mol-base/computation'
 
 export interface Tokenizer {
     data: string,

src/mol-io/reader/gro/parser.ts

@@ -10,7 +10,7 @@ import FixedColumn from '../common/text/column/fixed'
 import { ColumnType, UndefinedColumn } from '../common/column'
 import * as Schema from './schema'
 import Result from '../result'
-import Computation from '../../../common/computation'
+import Computation from '../../../mol-base/computation'
 
 interface State {
     tokenizer: Tokenizer,

src/perf-tests/chunked-array-vs-native.ts

@@ -1,5 +1,5 @@
 import * as B from 'benchmark'
-import ChunkedArray from '../common/collections/chunked-array'
+import ChunkedArray from '../mol-base/collections/chunked-array'
 
 function testNative(size: number) {
     const xs = new Array(size);

src/perf-tests/sets.ts

@@ -1,6 +1,6 @@
 import * as B from 'benchmark'
-import IntTuple from '../common/collections/int-tuple'
+import IntTuple from '../mol-base/collections/int-tuple'
-import OrdSet from '../common/collections/ordered-set'
+import OrdSet from '../mol-base/collections/ordered-set'
 import AtomSet from '../mol-data/atom-set'
 
 namespace Iteration {

src/perf-tests/sort.ts

@@ -1,5 +1,5 @@
 import * as B from 'benchmark'
-import * as Sort from '../common/collections/sort'
+import * as Sort from '../mol-base/collections/sort'
 
 function shuffle(a: number[]) {
     for (let i = a.length - 1; i > 0; i--) {

src/script.ts

@@ -15,7 +15,7 @@ const writeFileAsync = util.promisify(fs.writeFile);
 import Gro from './mol-io/reader/gro/parser'
 import CIF from './mol-io/reader/cif/index'
 
-import Computation from './common/computation'
+import Computation from './mol-base/computation'
 
 // import { toTypedFrame as applySchema } from './reader/cif/schema'
 import { generateSchema } from './mol-io/reader/cif/schema/utils'