Issue #2: fixed build errors & clean ups

src/extensions/tmdet/behavior.ts

@@ -26,7 +26,7 @@ import { MembraneOrientationProvider, MembraneOrientation, TmDetDescriptorCache
 import { applyTransformations, createMembraneOrientation } from './transformation';
 import { ComponentsType, PDBTMDescriptor, PMS } from './types';
 import { registerTmDetSymmetry } from './symmetry';
-import { LabeledResidues, TmLabelProvider } from './labeling';
+import { LabeledResidues } from './labeling';
 import { TmDetColorThemeProvider } from './tmdet-color-theme';
 import { loadInitialSnapshot, rotateCamera, storeCameraSnapshot } from './camera';
 
@@ -54,7 +54,6 @@ export const TMDETMembraneOrientation = PluginBehavior.create<{ autoAttach: bool
             this.ctx.query.structure.registry.add(isTransmembrane);
 
             this.ctx.representation.structure.themes.colorThemeRegistry.add(TmDetColorThemeProvider);
-            //LabeledResidues.labelProvider!.label = TmLabelProvider.label;
             this.ctx.managers.lociLabels.addProvider(LabeledResidues.labelProvider!);
             this.ctx.customModelProperties.register(LabeledResidues.propertyProvider, true);
 

src/extensions/tmdet/labeling.ts

@@ -8,12 +8,9 @@
 import { DebugUtil } from '../../apps/tm-viewer';
 import { CustomElementProperty } from '../../mol-model-props/common/custom-element-property';
 import { Model, ElementIndex } from '../../mol-model/structure';
-import { Loci } from '../../mol-model/loci';
-import { LociLabel, LociLabelProvider } from '../../mol-plugin-state/manager/loci-label';
 import { TmDetChainListCache, TmDetDescriptorCache } from './prop';
 import { createResidueListsPerChain } from './tmdet-color-theme';
 import { ChainList, getResidue } from './types';
-import { OrderedSet } from '../../mol-data/int';
 
 const siteLabels = [
     "Side1",
@@ -66,10 +63,10 @@ export const LabeledResidues = CustomElementProperty.create<number>({
             const residueIdx = residueIndex[i];
             const chainIdx = chainIndex[i];
             const residueAuthId = model.atomicHierarchy.residues.auth_seq_id.value(residueIdx).toString();
-            const residueName = model.atomicHierarchy.atoms.auth_comp_id.value(i).toString();
             const chainAuthId = model.atomicHierarchy.chains.auth_asym_id.value(chainIdx).toString();
-            const chainLabel = model.atomicHierarchy.chains.label_asym_id.value(chainIdx).toString();
-            //DebugUtil.log(`${i} ${residueIdx} ${residueName} ${residueAuthId} ${chainIdx} ${chainAuthId} ${chainLabel}`);
+            // const residueName = model.atomicHierarchy.atoms.auth_comp_id.value(i).toString();
+            // const chainLabel = model.atomicHierarchy.chains.label_asym_id.value(chainIdx).toString();
+            // DebugUtil.log(`${i} ${residueIdx} ${residueName} ${residueAuthId} ${chainIdx} ${chainAuthId} ${chainLabel}`);
     
             map.set(i as ElementIndex, getSiteId(chainList, chainAuthId, residueAuthId));
         }
@@ -80,28 +77,3 @@ export const LabeledResidues = CustomElementProperty.create<number>({
         return siteLabels[e];
     }
 });
-
-// function residueLabel(chains: ChainList, chainId: string, residueId: string): string {
-//     let label = DefaultResidueLabel;
-
-//     const residue = getResidue(chains, chainId, residueId);
-//     if (residue) {
-//         label = siteLabels[residue.siteId];
-//     }
-
-//     return color;
-// }
-
-
-export const TmLabelProvider: LociLabelProvider = {
-    label: (loci: Loci): LociLabel => {
-        if (loci.kind == 'element-loci') {
-            DebugUtil.log('LabelProvider:', loci.elements[0].unit.model.atomicHierarchy.chains.auth_asym_id.toArray());
-            DebugUtil.log('LabelProvider:', loci.elements[0].unit.model.atomicHierarchy.chains.label_asym_id.toArray());
-            DebugUtil.log('LabelProvider:', loci.elements[0].unit.model.atomicHierarchy.chains.label_entity_id.toArray());
-            DebugUtil.log('IsLocation:', loci.structure.elementLocations());
-            DebugUtil.log('start:', OrderedSet.start(loci.elements[0].indices));
-        }
-        return "hello";
-    }
-}