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src/servers/model/ligand-writer/ligand-encoder.ts

@@ -17,7 +17,7 @@ export interface Atom {
     type_symbol: string
 }
 
-export abstract class LigandExplorer implements Encoder<string> {
+export abstract class LigandEncoder implements Encoder<string> {
     protected builder: StringBuilder;
     protected componentData: ComponentBond;
     readonly isBinary = false;

src/servers/model/ligand-writer/mol/encoder.ts

@@ -7,12 +7,12 @@
 import { StringBuilder } from '../../../../mol-util';
 import { Category } from '../../../../mol-io/writer/cif/encoder';
 import { getCategoryInstanceData } from '../../../../mol-io/writer/cif/encoder/util';
-import { LigandExplorer } from '../ligand-encoder';
+import { LigandEncoder } from '../ligand-encoder';
 
 // specification: http://c4.cabrillo.edu/404/ctfile.pdf
 // SDF wraps MOL and allows for multiple molecules per file as well as additional properties
 // TODO add support for stereo/chiral flags, add charges
-export class MolEncoder extends LigandExplorer {
+export class MolEncoder extends LigandEncoder {
     private meta: StringBuilder;
     private encoded = false;
     private error = false;

src/servers/model/ligand-writer/mol2/encoder.ts

@@ -5,7 +5,7 @@
  */
 
 import { Category } from "../../../../mol-io/writer/cif/encoder";
-import { LigandExplorer } from "../ligand-encoder";
+import { LigandEncoder } from "../ligand-encoder";
 import { StringBuilder } from "../../../../mol-util";
 import { getCategoryInstanceData } from "../../../../mol-io/writer/cif/encoder/util";
 import { BondType } from "../../../../mol-model/structure/model/types";
@@ -13,7 +13,7 @@ import { BondType } from "../../../../mol-model/structure/model/types";
 // specification: http://chemyang.ccnu.edu.cn/ccb/server/AIMMS/mol2.pdf
 // TODO amide (and real sp/sp2/sp3) support for bonds and SYBYL atom types: see https://www.sdsc.edu/CCMS/Packages/cambridge/pluto/atom_types.html
 // TODO support charges
-export class Mol2Encoder extends LigandExplorer {
+export class Mol2Encoder extends LigandEncoder {
     private meta: StringBuilder;
     private out: StringBuilder;
     private encoded = false;