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@@ -7,48 +7,83 @@ import {
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import {
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RcsbFvModulePublicInterface
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} from "@rcsb/rcsb-saguaro-app/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface";
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-import {buildMultipleAlignmentSequenceFv} from "@rcsb/rcsb-saguaro-app";
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+import {buildMultipleAlignmentSequenceFv, TagDelimiter} from "@rcsb/rcsb-saguaro-app";
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import {RcsbFvDOMConstants} from "../../../../RcsbFvConstants/RcsbFvConstants";
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import {
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UniprotSequenceOnchangeInterface
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} from "@rcsb/rcsb-saguaro-app/build/dist/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder";
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+import {
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+ AlignmentRequestContextType
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+} from "@rcsb/rcsb-saguaro-app/build/dist/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory";
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+import {AlignmentResponse, TargetAlignment} from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
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-interface UniprotPfvManagerInterface<R> extends PfvManagerFactoryConfigInterface<R,{context: UniprotSequenceOnchangeInterface, module: RcsbFvModulePublicInterface}> {
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+interface UniprotPfvManagerInterface<R> extends PfvManagerFactoryConfigInterface<R,{context: UniprotSequenceOnchangeInterface;}> {
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upAcc:string;
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}
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-export class UniprotPfvManagerFactory<R> implements PfvManagerFactoryInterface<{upAcc:string},R,{context: UniprotSequenceOnchangeInterface, module: RcsbFvModulePublicInterface}> {
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+export class UniprotPfvManagerFactory<R> implements PfvManagerFactoryInterface<{upAcc:string},R,{context: UniprotSequenceOnchangeInterface;}> {
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+
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+ private readonly pluginLoadParamsDefinition:(id: string)=>R;
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+ constructor(config: {pluginLoadParamsDefinition:(id: string)=>R}) {
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+ this.pluginLoadParamsDefinition = config.pluginLoadParamsDefinition;
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+ }
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+
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getPfvManager(config: UniprotPfvManagerInterface<R>): PfvManagerInterface {
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- return new UniprotPfvManager(config);
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+ return new UniprotPfvManager({...config, loadParamRequest:this.pluginLoadParamsDefinition});
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}
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}
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-class UniprotPfvManager<R> extends AbstractPfvManager<{upAcc:string},R,{context: UniprotSequenceOnchangeInterface, module: RcsbFvModulePublicInterface}>{
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+class UniprotPfvManager<R> extends AbstractPfvManager<{upAcc:string},R,{context: UniprotSequenceOnchangeInterface;}>{
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private readonly upAcc:string;
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- private module: Promise<RcsbFvModulePublicInterface>;
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+ private readonly loadParamRequest:(id: string)=>R;
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+ private module:RcsbFvModulePublicInterface;
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- constructor(config:UniprotPfvManagerInterface<R>) {
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+ constructor(config:UniprotPfvManagerInterface<R> & {loadParamRequest:(id: string)=>R}) {
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super(config);
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this.upAcc = config.upAcc;
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+ this.loadParamRequest = config.loadParamRequest;
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}
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async create(): Promise<RcsbFvModulePublicInterface | undefined> {
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- this.module = buildMultipleAlignmentSequenceFv(
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+ this.module = await buildMultipleAlignmentSequenceFv(
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this.rcsbFvDivId,
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RcsbFvDOMConstants.SELECT_BUTTON_PFV_ID,
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this.upAcc,
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{
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onChangeCallback:(context,module)=>{
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- this.pfvChangeCallback({context, module});
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+ this.pfvChangeCallback({context});
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+ }
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+ },{
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+ ... this.additionalConfig,
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+ trackConfigModifier: {
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+ alignment: (alignmentContext: AlignmentRequestContextType, targetAlignment: TargetAlignment) => new Promise((resolve)=>{
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+ resolve({
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+ rowMark:{
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+ clickCallback: ()=>{
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+ this.loadAlignment(alignmentContext,targetAlignment);
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+ }
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+ }
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+ });
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+ })
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}
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- },
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- this.additionalConfig
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+ }
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);
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- const module: RcsbFvModulePublicInterface = await this.module;
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- console.log(module);
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- this.rcsbFvContainer.set(module);
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- return module;
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+ this.rcsbFvContainer.set(this.module);
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+ await this.readyStateLoad();
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+ return this.module;
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+ }
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+
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+ private async readyStateLoad(): Promise<void> {
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+ const alignments: AlignmentResponse = await this.module.getAlignmentResponse();
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+ if(alignments.target_alignment && alignments.target_alignment.length > 0 && typeof alignments.target_alignment[0]?.target_id === "string"){
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+ await this.loadAlignment({queryId:this.upAcc}, alignments.target_alignment[0]);
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+ }
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+ }
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+
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+ private async loadAlignment(alignmentContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<void> {
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+ if(typeof targetAlignment.target_id === "string")
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+ await this.plugin.load( this.loadParamRequest(TagDelimiter.parseEntity(targetAlignment.target_id).entryId) )
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}
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}
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bioinsilico