Sākums Izpētīt Palīdzība
Pierakstīties
web
/
TmMolStar
3
0
Atdalīts 0
Faili Problēmas 0 Izmaiņu pieprasījumi 0 Vikivietne
Pārlūkot izejas kodu

minor

bioinsilico 4 gadi atpakaļ
vecāks
fb02113d28
revīzija
371127d8d5
5 mainītis faili ar 9 papildinājumiem un 82 dzēšanām
Dalītais skats Rādīt salīdzināšanas statistiku
  1. 0 73
      examples/local.html
  2. 1 1
      src/RcsbFvSequence/SequenceViews/AbstractView.tsx
  3. 4 4
      src/RcsbFvStructure/StructurePlugins/MolstarPlugin.ts
  4. 1 1
      src/RcsbFvStructure/StructurePlugins/SaguaroPluginInterface.ts
  5. 3 3
      src/examples/custom-panel/example.tsx

+ 0 - 73
examples/local.html
Parādīt failu 

@@ -1,73 +0,0 @@
 
-<html lang="en">
 
-<head>
 
-    <script src="../dist/build/rcsb-saguaro-3d.js" type="text/javascript"></script>
 
-    <title>Saguaro 3D</title>
 
-</head>
 
-<body>
 
-
 
-<div id="pfv" style="margin-top: 200px;" ></div>
 
-<script type="text/javascript">
 
-    function getJsonFromUrl(url) {
 
-        if(!url) url = location.search;
 
-        var query = url.substr(1);
 
-        var result = {};
 
-        query.split("&").forEach(function(part) {
 
-            var item = part.split("=");
 
-            result[item[0]] = decodeURIComponent(item[1]);
 
-        });
 
-        return result;
 
-    }
 
-    const args = getJsonFromUrl();
 
-    const structurePanelConfig = {
 
-        loadConfig:{
 
-            method:"loadPdbId",
 
-            pdbId: args.entryId
 
-        }
 
-    };
 
-    /*const sequencePanelConfig = {
 
-        type: "assembly",
 
-        blockConfig: {
 
-            entryId:args.entryId
 
-        }
 
-    };*/
 
-    const sequencePanelConfig = {
 
-        type: "custom",
 
-        config: {
 
-            boardConfig: {
 
-                range: {
 
-                    min: 1,
 
-                    max: 110
 
-                },
 
-                trackWidth: 940,
 
-                rowTitleWidth: 60,
 
-                includeAxis: true
 
-            },
 
-            rowConfig: [{
 
-                trackId: "blockTrack",
 
-                trackHeight: 20,
 
-                trackColor: "#F9F9F9",
 
-                displayType: "block",
 
-                displayColor: "#FF0000",
 
-                rowTitle: "BLOCK",
 
-                trackData: [{
 
-                    begin: 30,
 
-                    end: 60,
 
-                    gaps:[{
 
-                        begin:40,
 
-                        end:50
 
-                    }]
 
-                },{
 
-                    begin: 80,
 
-                    end: 90,
 
-                    openEnd: true
 
-                }]
 
-            }]
 
-        }
 
-    };
 
-    const fv = new RcsbFv3D.Create(structureConfig, sequenceConfig);
 
-    fv.render();
 
-</script>
 
-
 
-
 
-</body>
 
-</html>

+ 1 - 1
src/RcsbFvSequence/SequenceViews/AbstractView.tsx
Parādīt failu 

@@ -36,7 +36,7 @@ export abstract class AbstractView<P,S> extends React.Component <P & AbstractVie
 
 
     componentDidMount() {
 
         this.props.plugin.selectCallback(this.structureSelectionCallback.bind(this));
 
-        this.props.plugin.objectChangeCallback(this.objectChangeCallback.bind(this));
 
+        this.props.plugin.setObjectChangeCallback(this.objectChangeCallback.bind(this));
 
         window.addEventListener('resize', this.updatePfvDimensions.bind(this));
 
     }

+ 4 - 4
src/RcsbFvStructure/StructurePlugins/MolstarPlugin.ts
Parādīt failu 

@@ -48,7 +48,7 @@ export class MolstarPlugin extends AbstractPlugin implements SaguaroPluginInterf
 
     private plugin: Viewer;
 
     private localSelectionFlag: boolean = false;
 
     private loadingFlag: boolean = false;
 
-    private _objectChangeCallback: ()=>void;
 
+    private objectChangeCallback: ()=>void;
 
     private modelMap: Map<string,string|undefined> = new Map<string, string>();
 
 
     constructor(props: RcsbFvSelection) {
 
@@ -87,7 +87,7 @@ export class MolstarPlugin extends AbstractPlugin implements SaguaroPluginInterf
 
         }
 
         this.loadingFlag = false;
 
         this.mapModels(loadConfig.params);
 
-        this._objectChangeCallback();
 
+        this.objectChangeCallback();
 
     }
 
 
     private static checkLoadData(loadConfig: LoadMolstarInterface): boolean{
 
@@ -167,8 +167,8 @@ export class MolstarPlugin extends AbstractPlugin implements SaguaroPluginInterf
 
         this.plugin.pluginCall(f);
 
     }
 
 
-    public objectChangeCallback(f:()=>void){
 
-        this._objectChangeCallback = f;
 
+    public setObjectChangeCallback(f:()=>void){
 
+        this.objectChangeCallback = f;
 
         this.plugin.getPlugin().state.events.object.updated.subscribe((o)=>{
 
             if(this.loadingFlag)
 
                 return;

+ 1 - 1
src/RcsbFvStructure/StructurePlugins/SaguaroPluginInterface.ts
Parādīt failu 

@@ -10,7 +10,7 @@ export interface SaguaroPluginInterface {
 
     selectCallback: ( g:()=>void)=>void;
 
     clear: () => void;
 
     getChains: () => Map<string,{entryId: string; chains:Array<{label:string, auth:string}>;}>;
 
-    objectChangeCallback: (f:()=>void)=>void;
 
+    setObjectChangeCallback: (f:()=>void)=>void;
 
 }
 
 
 export interface SaguaroPluginPublicInterface {

+ 3 - 3
src/examples/custom-panel/example.tsx
Parādīt failu 

@@ -26,7 +26,7 @@ const structureConfig:StructureViewInterface = {
 
             pdbId: "101m",
 
             id:"model_1"
 
         },{
 
-            pdbId: "1ash",
 
+            pdbId: "1xxx",
 
             id:"model_2"
 
         }]
 
     }
 
@@ -115,8 +115,8 @@ const fv2: FeatureViewInterface = {
 
     },
 
     rowConfig: rowConfig2,
 
     sequenceSelectionCallback: (plugin: SaguaroPluginPublicInterface, selection: RcsbFvSelection, d: RcsbFvTrackDataElementInterface) => {
 
-        selection.setSelectionFromRegion("model_2", "A", {begin:d.begin, end:d.end??d.begin});
 
-        plugin.select("model_2", "A", d.begin, d.end??d.begin);
 
+        selection.setSelectionFromRegion("model_2", "B", {begin:d.begin, end:d.end??d.begin});
 
+        plugin.select("model_2", "B", d.begin, d.end??d.begin);
 
     },
 
     structureSelectionCallback: (pfv: RcsbFv, selection: RcsbFvSelection) => {
 
         const sel: ChainSelectionInterface | undefined = selection.getSelectionWithCondition("model_2", "A");