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@@ -38,12 +38,12 @@ const DownloadStructure = StateAction.build({
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'pdb': PD.Group({
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provider: PD.Group({
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id: PD.Text('1tqn', { label: 'PDB Id(s)', description: 'One or more comma separated PDB ids.' }),
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- server: PD.MappedStatic('rcsb', {
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+ server: PD.MappedStatic('pdbe', {
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'rcsb': PD.Group({
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encoding: PD.Select('bcif', [['cif', 'cif'], ['bcif', 'bcif']] as ['cif' | 'bcif', string][]),
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}, { label: 'RCSB PDB', isFlat: true }),
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'pdbe': PD.Group({
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- variant: PD.Select('updated', [['updated', 'Updated'], ['archival', 'Archival']] as ['updated' | 'archival', string][]),
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+ variant: PD.Select('updated-bcif', [['updated-bcif', 'Updated (bcif)'], ['updated', 'Updated'], ['archival', 'Archival']] as ['updated' | 'archival', string][]),
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}, { label: 'PDBe', isFlat: true }),
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}),
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}, { pivot: 'id' }),
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@@ -90,7 +90,9 @@ const DownloadStructure = StateAction.build({
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downloadParams = src.params.provider.server.name === 'pdbe'
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? src.params.provider.server.params.variant === 'updated'
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? getDownloadParams(src.params.provider.id, id => `https://www.ebi.ac.uk/pdbe/static/entry/${id.toLowerCase()}_updated.cif`, id => `PDBe: ${id} (updated cif)`, false)
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- : getDownloadParams(src.params.provider.id, id => `https://www.ebi.ac.uk/pdbe/static/entry/${id.toLowerCase()}.cif`, id => `PDBe: ${id} (cif)`, false)
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+ : src.params.provider.server.params.variant === 'updated-bcif'
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+ ? getDownloadParams(src.params.provider.id, id => `https://www.ebi.ac.uk/pdbe/entry-files/download/${id.toLowerCase()}.bcif`, id => `PDBe: ${id} (updated cif)`, true)
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+ : getDownloadParams(src.params.provider.id, id => `https://www.ebi.ac.uk/pdbe/static/entry/${id.toLowerCase()}.cif`, id => `PDBe: ${id} (cif)`, false)
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: src.params.provider.server.params.encoding === 'cif'
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? getDownloadParams(src.params.provider.id, id => `https://files.rcsb.org/download/${id.toUpperCase()}.cif`, id => `RCSB: ${id} (cif)`, false)
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: getDownloadParams(src.params.provider.id, id => `https://models.rcsb.org/${id.toUpperCase()}.bcif`, id => `RCSB: ${id} (bcif)`, true);
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