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Issue 663: fixed chain_deletes of 6wtx

cycle20 vor 1 Jahr
Ursprung
Commit
4b7b6bfc83
2 geänderte Dateien mit 15130 neuen und 3 gelöschten Zeilen
  1. 3 3
      data/tmdet-example-annotations/6wtx.json
  2. 15127 0
      data/tmdet-example-annotations/7yuy.json

+ 3 - 3
data/tmdet-example-annotations/6wtx.json

@@ -8998,9 +8998,9 @@
         },
         "biomatrix": {
             "chain_deletes": [
-                "A",
-                "B"
+                "C",
+                "D"
             ]
         }
     }
-}
+}

+ 15127 - 0
data/tmdet-example-annotations/7yuy.json

@@ -0,0 +1,15127 @@
+{
+    "data_resource": "PDBTM",
+    "resource_version": " 989",
+    "software_version": "3.2.134",
+    "resource_entry_url": "http://pdbtm.unitmp.org/entry/7yuy",
+    "model_coordinates_url": "http://pdbtm.unitmp.org/api/v1/entry/7yuy.trpdb",
+    "release_date": "30/03/2023",
+    "pdb_id": "7yuy",
+    "includes_het_groups": false,
+    "chains": [
+        {
+            "chain_label": "F",
+            "additional_chain_annotations": {
+                "type": "alpha",
+                "num_tm": "15"
+            },
+            "residues": [
+                {
+                    "pdb_res_label": "146",
+                    "aa_type": "GLU",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "147",
+                    "aa_type": "PRO",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "148",
+                    "aa_type": "TYR",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "149",
+                    "aa_type": "PRO",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "150",
+                    "aa_type": "ALA",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "151",
+                    "aa_type": "TRP",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "152",
+                    "aa_type": "THR",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "153",
+                    "aa_type": "ALA",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "154",
+                    "aa_type": "ASP",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "155",
+                    "aa_type": "SER",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "156",
+                    "aa_type": "GLN",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
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+                    "aa_type": "SER",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
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+                    "aa_type": "PRO",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "159",
+                    "aa_type": "VAL",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
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+                    "pdb_res_label": "160",
+                    "aa_type": "SER",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "161",
+                    "aa_type": "ILE",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "162",
+                    "aa_type": "GLU",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
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+                    "aa_type": "GLN",
+                    "site_data": [
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+                            "confidence_classification": "curated"
+                        }
+                    ]
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+                    "aa_type": "ILE",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
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+                    "aa_type": "GLU",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
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+                    "aa_type": "ASP",
+                    "site_data": [
+                        {
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+                            "confidence_classification": "curated"
+                        }
+                    ]
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+                    "aa_type": "ILE",
+                    "site_data": [
+                        {
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+                            "confidence_classification": "curated"
+                        }
+                    ]
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+                    "aa_type": "PHE",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
+                    "pdb_res_label": "169",
+                    "aa_type": "ILE",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
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+                    "aa_type": "ASP",
+                    "site_data": [
+                        {
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+                            "confidence_classification": "curated"
+                        }
+                    ]
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+                    "aa_type": "LEU",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
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+                    "aa_type": "THR",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
+                {
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+                    "aa_type": "ASN",
+                    "site_data": [
+                        {
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+                            "confidence_classification": "curated"
+                        }
+                    ]
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+                    "aa_type": "ARG",
+                    "site_data": [
+                        {
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+                            "confidence_classification": "curated"
+                        }
+                    ]
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+                    "site_data": [
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+                            "confidence_classification": "curated"
+                        }
+                    ]
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+                    "aa_type": "GLY",
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+                        }
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+                        }
+                    ]
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+                    "site_data": [
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+                        }
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+                    "aa_type": "ARG",
+                    "site_data": [
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+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
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+                    "aa_type": "MET",
+                    "site_data": [
+                        {
+                            "site_id_ref": 2,
+                            "confidence_classification": "curated"
+                        }
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+                    "aa_type": "SER",
+                    "site_data": [
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+                            "confidence_classification": "curated"
+                        }
+                    ]
+                },
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+                    "aa_type": "PRO",
+                    "site_data": [
+                        {
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+                            "confidence_classification": "curated"
+                        }
+                    ]
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+                    "aa_type": "ASP",
+                    "site_data": [
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+                            "confidence_classification": "curated"
+                        }
+                    ]
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+                    "aa_type": "GLN",
+                    "site_data": [
+                        {
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+                            "confidence_classification": "curated"
+                        }
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+                            "confidence_classification": "curated"
+                        }
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+                    "aa_type": "LEU",
+                    "site_data": [
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+                        }
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+                    "aa_type": "LEU",
+                    "site_data": [
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+                        }
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+                    "aa_type": "HIS",
+                    "site_data": [
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