Renamed to mol*

LICENSE

@@ -1,6 +1,6 @@
 The MIT License
 
-    Copyright (c) 2017, MolIO contributors
+    Copyright (c) 2017, Mol* contributors
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

package.json

@@ -1,7 +1,7 @@
 {
-  "name": "molio",
+  "name": "mol-star",
   "version": "0.1.0",
-  "description": "Parsers for molecular data.",
+  "description": "Comprehensive molecular library.",
   "main": "dist/molio.js",
   "module": "dist/molio.esm.js",
   "types": "src/index.d.ts",

src/mol-base/collections/_spec/equiv-index.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/_spec/iterators.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/_spec/sort.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/chunked-array.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * from https://github.com/dsehnal/CIFTools.js
  * @author David Sehnal <david.sehnal@gmail.com>

src/mol-base/collections/database.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/database/_spec/table.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/database/column-helpers.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/database/column.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/database/database.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/database/table.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/equivalence-classes.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/hash-functions.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/hash-set.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/_spec/interval.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/_spec/linked-index.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/_spec/ordered-set.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/_spec/segmentation.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/_spec/sorted-array.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/_spec/tuple.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/impl/interval.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/impl/ordered-set.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/impl/segmentation.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/impl/sorted-array.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/interval.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/linked-index.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/ordered-set.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/segmentation.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/sorted-array.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/integer/tuple.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/iterator.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/collections/sort.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/computation.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * Adapted from https://github.com/dsehnal/LiteMol
  * @author David Sehnal <david.sehnal@gmail.com>

src/mol-base/geometry/grid-lookup.ts

@@ -0,0 +1,2 @@
+// TODO: 3d grid lookup (use single cell for small sets), make bounding sphere part of the structure
+// TODO: assign radius to points?

src/mol-base/geometry/sphere.ts

@@ -0,0 +1 @@
+// TODO: rebranded vec4

src/mol-base/geometry/transform.ts

@@ -0,0 +1,27 @@
+/**
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ *
+ * @author David Sehnal <david.sehnal@gmail.com>
+ */
+
+import { Mat4 } from '../math/linear-algebra-3d'
+
+interface Transform extends Readonly<{
+    transform: Mat4,
+    // cache the inverse of the transform
+    inverse: Mat4,
+    // optimize the identity case
+    isIdentity: boolean
+}> { }
+
+namespace Transform {
+    export function isIdentity(m: Mat4) {
+        throw 'nyi'
+    }
+
+    export function isRotationAndTranslation(m: Mat4) {
+        throw 'nyi'
+    }
+}
+
+export default Transform

src/mol-base/math/linear-algebra.ts → src/mol-base/math/linear-algebra-3d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/utils/bit-flags.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/utils/scheduler.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/utils/time.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-base/utils/uuid.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/_spec/atom-set.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/model.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/model/constants.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>

src/mol-data/structure/model/format.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/model/formats/mmcif.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/model/model.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/model/properties/computed.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/model/properties/conformation.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/model/properties/format-specific.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/model/properties/hierarchy.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/model/properties/transforms.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/model/utils/hierarchy-keys.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/query.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/query/generators.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/query/properties.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/query/query.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/query/selection.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/structure.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/structure/atom.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/structure/atom/set.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/structure/atom/set/builder.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/structure/atom/set/impl.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/structure/atom/set/properties.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/structure/operator.ts

@@ -1,10 +1,10 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 
-import { Mat4 } from 'mol-base/math/linear-algebra'
+import { Mat4 } from 'mol-base/math/linear-algebra-3d'
 
 interface Operator extends Readonly<{
     name: string,

src/mol-data/structure/structure/structure.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-data/structure/structure/unit.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-io/reader/_spec/cif.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-io/reader/_spec/column.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>

src/mol-io/reader/_spec/gro.spec.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>

src/mol-io/reader/cif.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-io/reader/cif/binary/decoder.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * From CIFTools.js
  * @author David Sehnal <david.sehnal@gmail.com>

src/mol-io/reader/cif/binary/encoding.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * From CIFTools.js
  * @author David Sehnal <david.sehnal@gmail.com>

src/mol-io/reader/cif/binary/field.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-io/reader/cif/binary/parser.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-io/reader/cif/data-model.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-io/reader/cif/schema.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-io/reader/cif/schema/dic.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

src/mol-io/reader/cif/schema/mmcif.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-io/reader/cif/schema/utils.ts

@@ -116,7 +116,7 @@ function getCode (d: Data.Frame, ctx: FrameData): [string, string[]]|undefined {
 }
 
 const header = `/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Your friendly code generator
  */

src/mol-io/reader/cif/text/field.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-io/reader/cif/text/parser.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-io/reader/common/binary/column.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-io/reader/common/text/column/fixed.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-io/reader/common/text/column/token.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/mol-io/reader/common/text/number-parser.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * from https://github.com/dsehnal/CIFTools.js
  * @author David Sehnal <david.sehnal@gmail.com>

src/mol-io/reader/common/text/tokenizer.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * mostly from https://github.com/dsehnal/CIFTools.js
  * @author David Sehnal <david.sehnal@gmail.com>

src/mol-io/reader/gro/parser.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>

src/mol-io/reader/gro/schema.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>

src/mol-io/reader/mol2/schema.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

src/mol-io/reader/result.ts

@@ -1,5 +1,5 @@
 /*
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * from https://github.com/dsehnal/CIFTools.js
  * @author David Sehnal <david.sehnal@gmail.com>

src/mol-io/utils/msgpack/decode.ts

@@ -1,5 +1,5 @@
 /*
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * Adapted from https://github.com/rcsb/mmtf-javascript
  * @author Alexander Rose <alexander.rose@weirdbyte.de>

src/mol-io/utils/msgpack/encode.ts

@@ -1,5 +1,5 @@
 /*
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * Adapted from https://github.com/rcsb/mmtf-javascript
  * @author Alexander Rose <alexander.rose@weirdbyte.de>

src/mol-io/utils/short-string-pool.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * from https://github.com/dsehnal/CIFTools.js
  * @author David Sehnal <david.sehnal@gmail.com>

src/mol-io/utils/utf8.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * Adapted from https://github.com/rcsb/mmtf-javascript
  * @author Alexander Rose <alexander.rose@weirdbyte.de>

src/perf-tests/structure.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */

src/script.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>