saguaro update

package-lock.json

@@ -1,18 +1,18 @@
 {
   "name": "@rcsb/rcsb-saguaro-3d",
-  "version": "2.4.0-data-provider.9",
+  "version": "2.4.0-data-provider.11",
   "lockfileVersion": 2,
   "requires": true,
   "packages": {
     "": {
       "name": "@rcsb/rcsb-saguaro-3d",
-      "version": "2.4.0-data-provider.9",
+      "version": "2.4.0-data-provider.11",
       "license": "MIT",
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         "@rcsb/rcsb-molstar": "^2.5.11",
         "@rcsb/rcsb-saguaro": "^2.5.5",
-        "@rcsb/rcsb-saguaro-app": "^4.6.0-data-provider.10",
+        "@rcsb/rcsb-saguaro-app": "^5.0.0-data-provider.11",
         "molstar": "^3.31.4"
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@@ -911,20 +920,6 @@
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@@ -1743,12 +1738,11 @@
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@@ -2902,9 +2889,9 @@
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@@ -13624,6 +13628,7 @@
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       "resolved": "https://registry.npmjs.org/@babel/helpers/-/helpers-7.18.9.tgz",
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+      "dev": true,
       "requires": {
         "@babel/template": "^7.18.6",
         "@babel/traverse": "^7.18.9",
@@ -13887,14 +13892,6 @@
         "@babel/helper-plugin-utils": "^7.8.0"
       }
     },
-    "@babel/plugin-syntax-jsx": {
-      "version": "7.18.6",
-      "resolved": "https://registry.npmjs.org/@babel/plugin-syntax-jsx/-/plugin-syntax-jsx-7.18.6.tgz",
-      "integrity": "sha512-6mmljtAedFGTWu2p/8WIORGwy+61PLgOMPOdazc7YoJ9ZCWUyFy3A6CpPkRKLKD1ToAesxX8KGEViAiLo9N+7Q==",
-      "requires": {
-        "@babel/helper-plugin-utils": "^7.18.6"
-      }
-    },
     "@babel/plugin-syntax-logical-assignment-operators": {
       "version": "7.10.4",
       "resolved": "https://registry.npmjs.org/@babel/plugin-syntax-logical-assignment-operators/-/plugin-syntax-logical-assignment-operators-7.10.4.tgz",
@@ -14463,12 +14460,11 @@
       "dev": true
     },
     "@emotion/babel-plugin": {
-      "version": "11.10.5",
-      "resolved": "https://registry.npmjs.org/@emotion/babel-plugin/-/babel-plugin-11.10.5.tgz",
-      "integrity": "sha512-xE7/hyLHJac7D2Ve9dKroBBZqBT7WuPQmWcq7HSGb84sUuP4mlOWoB8dvVfD9yk5DHkU1m6RW7xSoDtnQHNQeA==",
+      "version": "11.10.6",
+      "resolved": "https://registry.npmjs.org/@emotion/babel-plugin/-/babel-plugin-11.10.6.tgz",
+      "integrity": "sha512-p2dAqtVrkhSa7xz1u/m9eHYdLi+en8NowrmXeF/dKtJpU8lCWli8RUAati7NcSl0afsBott48pdnANuD0wh9QQ==",
       "requires": {
         "@babel/helper-module-imports": "^7.16.7",
-        "@babel/plugin-syntax-jsx": "^7.17.12",
         "@babel/runtime": "^7.18.3",
         "@emotion/hash": "^0.9.0",
         "@emotion/memoize": "^0.8.0",
@@ -14511,12 +14507,12 @@
       "integrity": "sha512-G/YwXTkv7Den9mXDO7AhLWkE3q+I92B+VqAE+dYG4NGPaHZGvt3G8Q0p9vmE+sq7rTGphUbAvmQ9YpbfMQGGlA=="
     },
     "@emotion/react": {
-      "version": "11.10.5",
-      "resolved": "https://registry.npmjs.org/@emotion/react/-/react-11.10.5.tgz",
-      "integrity": "sha512-TZs6235tCJ/7iF6/rvTaOH4oxQg2gMAcdHemjwLKIjKz4rRuYe1HJ2TQJKnAcRAfOUDdU8XoDadCe1rl72iv8A==",
+      "version": "11.10.6",
+      "resolved": "https://registry.npmjs.org/@emotion/react/-/react-11.10.6.tgz",
+      "integrity": "sha512-6HT8jBmcSkfzO7mc+N1L9uwvOnlcGoix8Zn7srt+9ga0MjREo6lRpuVX0kzo6Jp6oTqDhREOFsygN6Ew4fEQbw==",
       "requires": {
         "@babel/runtime": "^7.18.3",
-        "@emotion/babel-plugin": "^11.10.5",
+        "@emotion/babel-plugin": "^11.10.6",
         "@emotion/cache": "^11.10.5",
         "@emotion/serialize": "^1.1.1",
         "@emotion/use-insertion-effect-with-fallbacks": "^1.0.0",
@@ -14564,16 +14560,16 @@
       "integrity": "sha512-AHPmaAx+RYfZz0eYu6Gviiagpmiyw98ySSlQvCUhVGDRtDFe4DBS0x1bSjdF3gqUDYOczB+yYvBTtEylYSdRhg=="
     },
     "@floating-ui/core": {
-      "version": "1.2.1",
-      "resolved": "https://registry.npmjs.org/@floating-ui/core/-/core-1.2.1.tgz",
-      "integrity": "sha512-LSqwPZkK3rYfD7GKoIeExXOyYx6Q1O4iqZWwIehDNuv3Dv425FIAE8PRwtAx1imEolFTHgBEcoFHm9MDnYgPCg=="
+      "version": "1.2.2",
+      "resolved": "https://registry.npmjs.org/@floating-ui/core/-/core-1.2.2.tgz",
+      "integrity": "sha512-FaO9KVLFnxknZaGWGmNtjD2CVFuc0u4yeGEofoyXO2wgRA7fLtkngT6UB0vtWQWuhH3iMTZZ/Y89CMeyGfn8pA=="
     },
     "@floating-ui/dom": {
-      "version": "1.2.1",
-      "resolved": "https://registry.npmjs.org/@floating-ui/dom/-/dom-1.2.1.tgz",
-      "integrity": "sha512-Rt45SmRiV8eU+xXSB9t0uMYiQ/ZWGE/jumse2o3i5RGlyvcbqOF4q+1qBnzLE2kZ5JGhq0iMkcGXUKbFe7MpTA==",
+      "version": "1.2.2",
+      "resolved": "https://registry.npmjs.org/@floating-ui/dom/-/dom-1.2.2.tgz",
+      "integrity": "sha512-URIeGCR7C0O7Q84v4pzpWY16io5B81Mg9OVsvltU4bG9jAnbWbIXA8+CnWsoBbAtr0GvxvoVNQ56DlZ+JR2NOQ==",
       "requires": {
-        "@floating-ui/core": "^1.2.1"
+        "@floating-ui/core": "^1.2.2"
       }
     },
     "@gar/promisify": {
@@ -15397,9 +15393,9 @@
       }
     },
     "@rcsb/rcsb-saguaro-app": {
-      "version": "4.6.0-data-provider.10",
-      "resolved": "https://registry.npmjs.org/@rcsb/rcsb-saguaro-app/-/rcsb-saguaro-app-4.6.0-data-provider.10.tgz",
-      "integrity": "sha512-9CeY0sm0dQJhGRJqcnrQgBtL0iW8WH16QhJ22iPT2hPcWHHrJzzl/0AyD/R8H2XLaFlHQZYp92NJkl47G8F5uQ==",
+      "version": "5.0.0-data-provider.11",
+      "resolved": "https://registry.npmjs.org/@rcsb/rcsb-saguaro-app/-/rcsb-saguaro-app-5.0.0-data-provider.11.tgz",
+      "integrity": "sha512-WPg3pZJqcGjmSzhd6zhf0FxspSGTFsYiZaeZ2OaFvdgM6sfXKZDrbdws2cEIaxUB3i9vL4SEAs3o0ycbuKCfQg==",
       "requires": {
         "@rcsb/rcsb-api-tools": "^4.1.1",
         "@rcsb/rcsb-charts": "^0.0.1",
@@ -16498,6 +16494,7 @@
       "version": "4.21.3",
       "resolved": "https://registry.npmjs.org/browserslist/-/browserslist-4.21.3.tgz",
       "integrity": "sha512-898rgRXLAyRkM1GryrrBHGkqA5hlpkV5MhtZwg9QXeiyLUYs2k00Un05aX5l2/yJIOObYKOpS2JNo8nJDE7fWQ==",
+      "dev": true,
       "requires": {
         "caniuse-lite": "^1.0.30001370",
         "electron-to-chromium": "^1.4.202",
@@ -16686,7 +16683,8 @@
     "caniuse-lite": {
       "version": "1.0.30001373",
       "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001373.tgz",
-      "integrity": "sha512-pJYArGHrPp3TUqQzFYRmP/lwJlj8RCbVe3Gd3eJQkAV8SAC6b19XS9BjMvRdvaS8RMkaTN8ZhoHP6S1y8zzwEQ=="
+      "integrity": "sha512-pJYArGHrPp3TUqQzFYRmP/lwJlj8RCbVe3Gd3eJQkAV8SAC6b19XS9BjMvRdvaS8RMkaTN8ZhoHP6S1y8zzwEQ==",
+      "dev": true
     },
     "capital-case": {
       "version": "1.0.4",
@@ -17931,7 +17929,8 @@
     "electron-to-chromium": {
       "version": "1.4.208",
       "resolved": "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.4.208.tgz",
-      "integrity": "sha512-diMr4t69FigAGUk2KovP0bygEtN/9AkqEVkzjEp0cu+zFFbZMVvwACpTTfuj1mAmFR5kNoSW8wGKDFWIvmThiQ=="
+      "integrity": "sha512-diMr4t69FigAGUk2KovP0bygEtN/9AkqEVkzjEp0cu+zFFbZMVvwACpTTfuj1mAmFR5kNoSW8wGKDFWIvmThiQ==",
+      "dev": true
     },
     "elliptic": {
       "version": "6.5.4",
@@ -18570,7 +18569,8 @@
     "gensync": {
       "version": "1.0.0-beta.2",
       "resolved": "https://registry.npmjs.org/gensync/-/gensync-1.0.0-beta.2.tgz",
-      "integrity": "sha512-3hN7NaskYvMDLQY55gnW3NQ+mesEAepTqlg+VEbj7zzqEMBVNhzcGYYeqFo/TlYz6eQiFcp1HcsCZO+nGgS8zg=="
+      "integrity": "sha512-3hN7NaskYvMDLQY55gnW3NQ+mesEAepTqlg+VEbj7zzqEMBVNhzcGYYeqFo/TlYz6eQiFcp1HcsCZO+nGgS8zg==",
+      "dev": true
     },
     "get-caller-file": {
       "version": "2.0.5",
@@ -19579,7 +19579,8 @@
     "json5": {
       "version": "2.2.3",
       "resolved": "https://registry.npmjs.org/json5/-/json5-2.2.3.tgz",
-      "integrity": "sha512-XmOWe7eyHYH14cLdVPoyg+GOH3rYX++KpzrylJwSW98t3Nk+U8XOl8FWKOgwtzdb8lXGf6zYwDUzeHMWfxasyg=="
+      "integrity": "sha512-XmOWe7eyHYH14cLdVPoyg+GOH3rYX++KpzrylJwSW98t3Nk+U8XOl8FWKOgwtzdb8lXGf6zYwDUzeHMWfxasyg==",
+      "dev": true
     },
     "jsonc-parser": {
       "version": "3.2.0",
@@ -20478,7 +20479,8 @@
     "node-releases": {
       "version": "2.0.6",
       "resolved": "https://registry.npmjs.org/node-releases/-/node-releases-2.0.6.tgz",
-      "integrity": "sha512-PiVXnNuFm5+iYkLBNeq5211hvO38y63T0i2KKh2KnUs3RpzJ+JtODFjkD8yjLwnDkTYF1eKXheUwdssR+NRZdg=="
+      "integrity": "sha512-PiVXnNuFm5+iYkLBNeq5211hvO38y63T0i2KKh2KnUs3RpzJ+JtODFjkD8yjLwnDkTYF1eKXheUwdssR+NRZdg==",
+      "dev": true
     },
     "nopt": {
       "version": "6.0.0",
@@ -20874,7 +20876,8 @@
     "picocolors": {
       "version": "1.0.0",
       "resolved": "https://registry.npmjs.org/picocolors/-/picocolors-1.0.0.tgz",
-      "integrity": "sha512-1fygroTLlHu66zi26VoTDv8yRgm0Fccecssto+MhsZ0D/DGW2sm8E8AjW7NU5VVTRt5GxbeZ5qBuJr+HyLYkjQ=="
+      "integrity": "sha512-1fygroTLlHu66zi26VoTDv8yRgm0Fccecssto+MhsZ0D/DGW2sm8E8AjW7NU5VVTRt5GxbeZ5qBuJr+HyLYkjQ==",
+      "dev": true
     },
     "picomatch": {
       "version": "2.3.1",
@@ -21622,7 +21625,8 @@
     "semver": {
       "version": "6.3.0",
       "resolved": "https://registry.npmjs.org/semver/-/semver-6.3.0.tgz",
-      "integrity": "sha512-b39TBaTSfV6yBrapU89p5fKekE2m/NwnDocOVruQFS1/veMgdzuPcnOM34M6CwxW8jH/lxEa5rBoDeUwu5HHTw=="
+      "integrity": "sha512-b39TBaTSfV6yBrapU89p5fKekE2m/NwnDocOVruQFS1/veMgdzuPcnOM34M6CwxW8jH/lxEa5rBoDeUwu5HHTw==",
+      "dev": true
     },
     "send": {
       "version": "0.18.0",
@@ -22661,6 +22665,7 @@
       "version": "1.0.5",
       "resolved": "https://registry.npmjs.org/update-browserslist-db/-/update-browserslist-db-1.0.5.tgz",
       "integrity": "sha512-dteFFpCyvuDdr9S/ff1ISkKt/9YZxKjI9WlRR99c180GaztJtRa/fn18FdxGVKVsnPY7/a/FDN68mcvUmP4U7Q==",
+      "dev": true,
       "requires": {
         "escalade": "^3.1.1",
         "picocolors": "^1.0.0"

package.json

@@ -86,7 +86,7 @@
     "@rcsb/rcsb-api-tools": "^4.1.1",
     "@rcsb/rcsb-molstar": "^2.5.11",
     "@rcsb/rcsb-saguaro": "^2.5.5",
-    "@rcsb/rcsb-saguaro-app": "^4.6.0-data-provider.10",
+    "@rcsb/rcsb-saguaro-app": "^5.0.0-data-provider.11",
     "molstar": "^3.31.4"
   },
   "bugs": {

src/RcsbFvSequence/RcsbFvCustomSequence.tsx

@@ -1,14 +1,11 @@
 import * as React from "react";
 import {CustomView, CustomViewInterface} from "./SequenceViews/CustomView/CustomView";
 import {
-    ViewerActionManagerInterface,
-    ViewerCallbackManagerInterface
+    ViewerActionManagerInterface
 } from "../RcsbFvStructure/StructureViewerInterface";
 import {PluginContext} from "molstar/lib/mol-plugin/context";
 import {RcsbFv, RcsbFvTrackDataElementInterface} from "@rcsb/rcsb-saguaro";
-import {RcsbView, RcsbViewInterface} from "./SequenceViews/RcsbView/RcsbView";
 import {RcsbFvStateInterface} from "../RcsbFvState/RcsbFvStateInterface";
-import {RcsbFvSequenceInterface} from "./RcsbFvSequence";
 
 export interface RcsbFvCustomSequenceInterface<R,L>{
     config: CustomViewInterface<R,L>;

src/RcsbFvSequence/SequenceViews/RcsbView/PfvManagerFactoryImplementation/MsaPfvManagerFactory.ts

@@ -114,24 +114,27 @@ class MsaPfvManager<T extends any[]> extends AbstractPfvManager<{id:string},{con
             beforeChangeCallback: () => {
                 this.config.pfvChangeCallback({context:{id:this.config.id}});
             },
-            externalUiComponents:[{
-                component: MsaUiSortComponent,
-                props: {
-                    rcsbFvContainer: this.rcsbFvContainer,
-                    stateManager: this.stateManager
-                }
-            },{
-                component: MsaUiSequenceAlignmentDownload,
-                props:{
-                    rcsbFvContainer: this.rcsbFvContainer,
-                    stateManager: this.stateManager
-                }
-            },{
-                component: MsaUiStructureDownload,
-                props:{
-                    stateManager: this.stateManager
-                }
-            }]
+            externalUiComponents: this.additionalConfig?.externalUiComponents?.replace ? {
+                replace: this.additionalConfig?.externalUiComponents?.replace
+            } : {
+                add: [{
+                    component: MsaUiSortComponent,
+                    props: {
+                        rcsbFvContainer: this.rcsbFvContainer,
+                        stateManager: this.stateManager
+                    }
+                },{
+                    component: MsaUiSequenceAlignmentDownload,
+                    props:{
+                        rcsbFvContainer: this.rcsbFvContainer,
+                        stateManager: this.stateManager
+                    }
+                },{
+                    component: MsaUiStructureDownload,
+                    props: {
+                        stateManager: this.stateManager
+                    }
+                }]}
         }];
         this.module = await this.config.buildMsaAlignmentFv(...args);
         this.rcsbFvContainer.set(this.module);

src/examples/alignment-provider/index.ts

@@ -14,6 +14,9 @@ document.addEventListener("DOMContentLoaded", function(event) {
         additionalConfig: {
             boardConfig: {
                 rowTitleWidth: 100
+            },
+            externalUiComponents: {
+                replace: []
             }
         }
     });