Issue #2: prototype of chain delete - made for 2atk: keeps only chain "C"

src/extensions/tmdet/behavior.ts

@@ -25,7 +25,7 @@ import { Color } from '../../mol-util/color';
 import { createStructureRepresentationParams } from '../../mol-plugin-state/helpers/structure-representation-params';
 import { PluginUIContext } from '../../mol-plugin-ui/context';
 import { StateObjectSelector } from "../../mol-state/object";
-import { applyTransformations, createMembraneOrientation, getAtomGroupExpression } from './transformation';
+import { applyTransformations, createMembraneOrientation, getAtomGroupExpression, getChainExpression } from './transformation';
 import { PDBTMDescriptor, PDBTMRegion, PMS } from './types';
 
 type StructureComponentType = StateObjectSelector<
@@ -137,7 +137,6 @@ async function createStructureRepresentation(plugin: PluginUIContext, pdbtmDescr
 
     await applyTransformations(plugin, pdbtmDescriptor);
 
-
     await buildStructureRepresentation(plugin, components);
 
     // TODO: colors of not curated sites
@@ -216,7 +215,7 @@ async function loadStructure(ctx: PluginUIContext, params: any, pdbtmDescriptor:
     const builders = ctx.builders;
     const data = await builders.data.download({
         url: params.structureUrl,
-        label: `UniTMP: ${pdbtmDescriptor.pdb_id}`,
+        label: `${pdbtmDescriptor.pdb_id}`,
         isBinary: false
     }); // , { state: { isGhost: true } });
     const trajectory = await builders.structure.parseTrajectory(data, 'mmcif');

src/extensions/tmdet/transformation.ts

@@ -78,14 +78,14 @@ export function createMembraneOrientation(pdbtmDescriptor: PDBTMDescriptor): Mem
     const transformation: Mat4 = transformationForStateTransform(membrane.transformation_matrix);
     const translation: Vec3 = Mat4.getTranslation(Vec3.zero(), transformation);
 
-    console.log("MEMBRANE TRNASFORMATION:\n\n", Mat4.makeTable(transformation));
+    // TODO: console.log("MEMBRANE TRNASFORMATION:\n\n", Mat4.makeTable(transformation));
     Vec3.negate(translation, translation);
     Mat4.setTranslation(transformation, translation);
-    console.log("MEMBRANE TRNASFORMATION: NEGATED trnltn:\n\n", Mat4.makeTable(transformation));
+    // TODO: console.log("MEMBRANE TRNASFORMATION: NEGATED trnltn:\n\n", Mat4.makeTable(transformation));
 
     // transpose rotation of transformation (inverse rotation)
     Mat4.transpose(transformation, Mat4.extractRotation(transformation, transformation));
-    console.log("MEMBRANE TRANSPOSED:\n\n", Mat4.makeTable(transformation));
+    // TODO: console.log("MEMBRANE TRANSPOSED:\n\n", Mat4.makeTable(transformation));
 
     // transform membrane normal
     const membraneNormal: Vec3 = Vec3.fromObj(membrane.normal);
@@ -118,7 +118,7 @@ export function transformationForStateTransform(tmatrix: PDBTMTransformationMatr
         tmatrix.rowy.t,
         tmatrix.rowz.t
     ));
-    console.log('MAT4\n', Mat4.makeTable(mx));
+    // TODO: console.log('MAT4\n', Mat4.makeTable(mx));
     return mx;
 }
 
@@ -133,7 +133,6 @@ export function getAtomGroupExpression(chainId: string, auth_array: number[]): E
 }
 
 export function getChainExpression(chainId: string): Expression {
-    // TODO console.log('auth_array:', auth_array);
     const query: Expression =
         MS.struct.generator.atomGroups({
             'chain-test': MS.core.rel.eq([chainId, MS.ammp('label_asym_id')])

src/mol-model-formats/structure/property/assembly.ts

@@ -56,6 +56,10 @@ function operatorGroupsProvider(generators: Generator[], matrices: Matrices): ()
         let operatorOffset = 0;
         for (let i = 0; i < generators.length; i++) {
             const gen = generators[i];
+            console.log(`GEN ${i}`, gen.asymIds);
+            gen.asymIds = [ 'C' ];
+            console.log('ASYMs', gen.asymIds);
+
             const operatorList = parseOperatorList(gen.expression);
             const operatorNames = expandOperators(operatorList);
             const operators = getAssemblyOperators(matrices, operatorNames, operatorOffset, gen.assemblyId);