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@@ -49,8 +49,8 @@
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var pdbId = getQueryParam('pdbId')
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var url = getQueryParam('url')
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- var _props = getQueryParam('props')
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- var props = _props && JSON.parse(_props)
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+ var _config = getQueryParam('config')
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+ var config = _config && JSON.parse(_config)
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var _loadPdbIds = getQueryParam('loadPdbIds')
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var loadPdbIds = _loadPdbIds && JSON.parse(_loadPdbIds)
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@@ -65,9 +65,9 @@
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})
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// load pdbId or url
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- if (pdbId) viewer.loadPdbId(pdbId, props)
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+ if (pdbId) viewer.loadPdbId(pdbId, config)
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else if (loadPdbIds) viewer.loadPdbIds(loadPdbIds);
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- else if (url) viewer.loadUrl(url, props)
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+ else if (url) viewer.loadUrl(url, config)
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</script>
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<div id="menu">
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<h2> RCSB PDB Mol* Viewer - Test Page</h2>
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@@ -99,294 +99,326 @@
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function loadExample(index) {
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var e = examples[index]
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- viewer.loadPdbId(e.id, e.props)
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+ viewer.loadPdbId(e.id, e.config)
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}
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var examples = [
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{
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id: '1CRN',
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info: 'small: only polymer',
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- props: {
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- kind: 'validation'
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+ config: {
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+ props: {
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+ kind: 'validation'
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+ }
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}
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},
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{
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id: '3CUP',
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info: 'small',
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- props: {
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- kind: 'density'
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+ config: {
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+ props: {
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+ kind: 'density'
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+ }
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}
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},
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- {
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- id: '6JI7',
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- info: 'small: NMR structure with RCI'
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- },
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+ // {
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+ // id: '6JI7',
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+ // info: 'small: NMR structure with RCI'
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+ // },
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{
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id: '3PQR',
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info: 'medium: polymer, carbs, ligands',
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- props: {
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- kind: 'feature',
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- assemblyId: '2',
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- target: {
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- labelCompId: 'RET'
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+ config: {
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+ props: {
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+ kind: 'feature',
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+ assemblyId: '2',
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+ target: {
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+ labelCompId: 'RET'
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+ }
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}
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}
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},
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{
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id: '1NMR',
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info: 'medium: nmr models',
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- props: {
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- kind: 'standard',
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- modelIndex: 2
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+ config: {
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+ props: {
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+ kind: 'standard',
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+ modelIndex: 2
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+ }
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}
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},
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{
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id: '4HHB',
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info: 'medium: classic, lots of validation geometry problems',
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- props: {
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- kind: 'standard',
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- assemblyId: '1'
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+ config: {
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+ props: {
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+ kind: 'standard',
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+ assemblyId: '1'
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+ }
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}
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},
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{
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id: '1A6D',
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info: 'medium: dihedral symmetry (D8)',
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- props: {
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- kind: 'symmetry',
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- assemblyId: '1',
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- symmetryIndex: 1
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+ config: {
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+ props: {
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+ kind: 'symmetry',
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+ assemblyId: '1',
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+ symmetryIndex: 1
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+ }
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}
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},
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- {
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- id: '1LTI',
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- info: 'medium: local symmetry (C5)'
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- },
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- {
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- id: '1QO1',
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- info: 'medium: C-alpha only, local symmetries (C10, C3)'
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- },
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- {
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- id: '6V9Q',
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- info: 'medium: local symmetries (H, C2)'
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- },
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- {
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- id: '6R6B',
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- info: 'medium: local symmetries (H x2)'
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- },
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- {
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- id: '2VTU',
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- info: 'medium: octahedral symmetry (O)'
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- },
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- {
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- id: '4NWP',
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- info: 'medium: tetrahedral symmetry (T)'
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- },
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- {
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- id: '1RB8',
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- info: 'medium-large: small virus capsid, icosahedral symmetry (I)'
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- },
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- {
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- id: '6QVK',
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- info: 'large: The cryo-EM structure of bacteriophage phi29 prohead (C5)'
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- },
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- {
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- id: '5Y6P',
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- info: 'large: Structure of the phycobilisome from the red alga Griffithsia pacifica'
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- },
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- {
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- id: '6O2S',
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- info: 'large: Deacetylated Microtubules (H)'
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- },
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- {
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- id: '5MQ7',
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- info: 'large: Structure of AaLS-13'
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- },
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- {
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- id: '5IV5',
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- info: 'large: Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex'
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- },
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- {
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- id: '3JC8',
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- info: 'large: Architectural model of the type IVa pilus machine in a piliated state'
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- },
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- {
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- id: '4V99',
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- info: 'large: The Crystallographic Structure of Panicum Mosaic Virus'
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- },
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- {
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- id: '3J3Q',
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- info: 'large: Atomic-level structure of the entire HIV-1 capsid'
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- },
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- {
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- id: '6NCL',
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- info: 'large: Near-atomic structure of icosahedrally averaged PBCV-1 capsid'
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- },
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- {
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- id: '6EKC',
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- info: 'large: Crystal structure of the BSD2 homolog of Arabidopsis thaliana bound to the octameric assembly of RbcL from Thermosynechococcus elongatus'
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- },
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- {
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- id: '1M4X',
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- info: 'large: PBCV-1 virus capsid, quasi-atomic model'
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- },
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- {
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- id: '4V5A',
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- info: 'large: Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet'
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- },
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- {
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- id: '4UDF',
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- info: 'large: STRUCTURAL BASIS OF HUMAN PARECHOVIRUS NEUTRALIZATION BY HUMAN MONOCLONAL ANTIBODIES'
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- },
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- {
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- id: '6J5K',
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- info: 'Cryo-EM structure of the mammalian ATP synthase tetramer bound with inhibitory protein IF1'
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- },
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- {
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- id: '6RVV',
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- info: 'Structure of left-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.'
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- },
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- {
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- id: '6EK5',
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- info: 'Near-atomic resolution structure of a plant geminivirus determined by electron cryo-microscopy'
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- },
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- {
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- id: '4V93',
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- info: 'Fitted coordinates for Lumbricus terrestris hemoglobin cryo-EM complex'
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- },
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- {
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- id: '5VLZ',
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- info: 'Backbone model for phage Qbeta capsid'
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- },
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- {
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- id: '5XTI',
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- info: 'Cryo-EM architecture of human respiratory chain megacomplex-I2III2IV2'
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- },
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- {
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- id: '6BY7',
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- info: 'Folding DNA into a lipid-conjugated nano-barrel for controlled reconstitution of membrane proteins'
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- },
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- {
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- id: '6C50',
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- info: 'Cross-alpha Amyloid-like Structure alphaAmS'
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- },
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- {
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- id: '6K3I',
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- info: 'Salmonella hook in curved state - 66 subunit models'
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- },
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- {
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- id: '1UNO',
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- info: 'Crystal structure of a d,l-alternating peptide. Double-starnded helix from beta-sheets.'
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- },
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- {
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- id: '1GRM',
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- info: 'REFINEMENT OF THE SPATIAL STRUCTURE OF THE GRAMICIDIN A TRANSMEMBRANE ION-CHANNEL. Single-starnded helix from beta-sheet. NMR structure.'
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- },
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+ // {
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+ // id: '1LTI',
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+ // info: 'medium: local symmetry (C5)'
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+ // },
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+ // {
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+ // id: '1QO1',
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+ // info: 'medium: C-alpha only, local symmetries (C10, C3)'
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+ // },
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+ // {
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+ // id: '6V9Q',
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+ // info: 'medium: local symmetries (H, C2)'
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+ // },
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+ // {
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+ // id: '6R6B',
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+ // info: 'medium: local symmetries (H x2)'
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+ // },
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+ // {
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+ // id: '2VTU',
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+ // info: 'medium: octahedral symmetry (O)'
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+ // },
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+ // {
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+ // id: '4NWP',
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+ // info: 'medium: tetrahedral symmetry (T)'
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+ // },
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+ // {
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+ // id: '1RB8',
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+ // info: 'medium-large: small virus capsid, icosahedral symmetry (I)'
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+ // },
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+ // {
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+ // id: '6QVK',
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+ // info: 'large: The cryo-EM structure of bacteriophage phi29 prohead (C5)'
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+ // },
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+ // {
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+ // id: '5Y6P',
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+ // info: 'large: Structure of the phycobilisome from the red alga Griffithsia pacifica'
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+ // },
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+ // {
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+ // id: '6O2S',
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+ // info: 'large: Deacetylated Microtubules (H)'
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+ // },
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+ // {
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+ // id: '5MQ7',
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+ // info: 'large: Structure of AaLS-13'
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+ // },
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+ // {
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+ // id: '5IV5',
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+ // info: 'large: Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex'
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+ // },
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+ // {
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+ // id: '3JC8',
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+ // info: 'large: Architectural model of the type IVa pilus machine in a piliated state'
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+ // },
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+ // {
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+ // id: '4V99',
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+ // info: 'large: The Crystallographic Structure of Panicum Mosaic Virus'
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+ // },
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+ // {
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+ // id: '3J3Q',
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+ // info: 'large: Atomic-level structure of the entire HIV-1 capsid'
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+ // },
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+ // {
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+ // id: '6NCL',
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+ // info: 'large: Near-atomic structure of icosahedrally averaged PBCV-1 capsid'
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+ // },
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+ // {
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+ // id: '6EKC',
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+ // info: 'large: Crystal structure of the BSD2 homolog of Arabidopsis thaliana bound to the octameric assembly of RbcL from Thermosynechococcus elongatus'
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+ // },
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+ // {
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+ // id: '1M4X',
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+ // info: 'large: PBCV-1 virus capsid, quasi-atomic model'
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+ // },
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+ // {
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+ // id: '4V5A',
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+ // info: 'large: Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet'
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+ // },
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|
|
+ // {
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+ // id: '4UDF',
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+ // info: 'large: STRUCTURAL BASIS OF HUMAN PARECHOVIRUS NEUTRALIZATION BY HUMAN MONOCLONAL ANTIBODIES'
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+ // },
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+ // {
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+ // id: '6J5K',
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+ // info: 'Cryo-EM structure of the mammalian ATP synthase tetramer bound with inhibitory protein IF1'
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+ // },
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+ // {
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+ // id: '6RVV',
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+ // info: 'Structure of left-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.'
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+ // },
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+ // {
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+ // id: '6EK5',
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+ // info: 'Near-atomic resolution structure of a plant geminivirus determined by electron cryo-microscopy'
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+ // },
|
|
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+ // {
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+ // id: '4V93',
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+ // info: 'Fitted coordinates for Lumbricus terrestris hemoglobin cryo-EM complex'
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+ // },
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+ // {
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+ // id: '5VLZ',
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+ // info: 'Backbone model for phage Qbeta capsid'
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+ // },
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+ // {
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+ // id: '5XTI',
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+ // info: 'Cryo-EM architecture of human respiratory chain megacomplex-I2III2IV2'
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+ // },
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+ // {
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+ // id: '6BY7',
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+ // info: 'Folding DNA into a lipid-conjugated nano-barrel for controlled reconstitution of membrane proteins'
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|
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+ // },
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+ // {
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+ // id: '6C50',
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+ // info: 'Cross-alpha Amyloid-like Structure alphaAmS'
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+ // },
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+ // {
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+ // id: '6K3I',
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+ // info: 'Salmonella hook in curved state - 66 subunit models'
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+ // },
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+ // {
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+ // id: '1UNO',
|
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|
+ // info: 'Crystal structure of a d,l-alternating peptide. Double-starnded helix from beta-sheets.'
|
|
|
+ // },
|
|
|
+ // {
|
|
|
+ // id: '1GRM',
|
|
|
+ // info: 'REFINEMENT OF THE SPATIAL STRUCTURE OF THE GRAMICIDIN A TRANSMEMBRANE ION-CHANNEL. Single-starnded helix from beta-sheet. NMR structure.'
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+ // },
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{
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id: '1B5F',
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info: 'oligosaccharide: NATIVE CARDOSIN A FROM CYNARA CARDUNCULUS L.',
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- props: {
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- kind: 'feature',
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- target: {
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- labelAsymId: 'E'
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+ config: {
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+ props: {
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+ kind: 'feature',
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+ target: {
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+ labelAsymId: 'E'
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+ }
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}
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}
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},
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{
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id: '1BRR',
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info: 'membrane: X-RAY STRUCTURE OF THE BACTERIORHODOPSIN TRIMER/LIPID COMPLEX with ANVIL membrane prediction',
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- props: {
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- kind: 'membrane'
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+ config: {
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+ props: {
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+ kind: 'membrane'
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+ }
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}
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},
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{
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id: '3SN6',
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info: 'membrane: Crystal structure of the beta2 adrenergic receptor-Gs protein complex with ANVIL membrane prediction',
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- props: {
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- kind: 'membrane'
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+ config: {
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+ props: {
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+ kind: 'membrane'
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+ }
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}
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},
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|
{
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|
|
id: '1SQX',
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|
|
info: 'membrane + assembly: Crystal Structure Analysis of Bovine Bc1 with Stigmatellin A',
|
|
|
- props: {
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|
|
- kind: 'membrane',
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|
|
- assemblyId: '1'
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|
|
+ config: {
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|
|
+ props: {
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|
|
+ kind: 'membrane',
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|
|
+ assemblyId: '1'
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+ }
|
|
|
}
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|
|
},
|
|
|
{
|
|
|
id: '6WJC',
|
|
|
info: 'ligand validation: Muscarinic acetylcholine receptor 1 - muscarinic toxin 7 complex: Focus + Density',
|
|
|
- props: {
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|
|
- kind: 'feature-density',
|
|
|
- target: {
|
|
|
- labelAsymId: 'D',
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|
|
- authSeqId: 502
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|
|
- },
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|
|
- // radius: 0,
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|
|
- // hiddenChannels: ['fo-fc(+ve)', 'fo-fc(-ve)']
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|
|
+ config: {
|
|
|
+ props: {
|
|
|
+ kind: 'feature-density',
|
|
|
+ target: {
|
|
|
+ labelAsymId: 'D',
|
|
|
+ authSeqId: 502
|
|
|
+ },
|
|
|
+ // radius: 0,
|
|
|
+ // hiddenChannels: ['fo-fc(+ve)', 'fo-fc(-ve)']
|
|
|
+ }
|
|
|
}
|
|
|
},
|
|
|
{
|
|
|
id: '5RL9',
|
|
|
info: 'ligand focus on wrong assembly: Crystal Structure of SARS-CoV-2 helicase in complex with Z1703168683',
|
|
|
- props: {
|
|
|
- kind: 'feature',
|
|
|
- assemblyId: '1',
|
|
|
- // UR7 is not present in assembly 1
|
|
|
- target: {
|
|
|
- labelCompId: 'UR7'
|
|
|
+ config: {
|
|
|
+ props: {
|
|
|
+ kind: 'feature',
|
|
|
+ assemblyId: '1',
|
|
|
+ // UR7 is not present in assembly 1
|
|
|
+ target: {
|
|
|
+ labelCompId: 'UR7'
|
|
|
+ }
|
|
|
}
|
|
|
}
|
|
|
},
|
|
|
{
|
|
|
id: '5VL5',
|
|
|
info: 'motif selection with operator: Coordination Chemistry within a Protein Host: Regulation of the Secondary Coordination Sphere',
|
|
|
- props: {
|
|
|
- kind: 'motif',
|
|
|
- assemblyId: '1',
|
|
|
- targets: [
|
|
|
- { labelAsymId: 'A', labelSeqId: 61 },
|
|
|
- { labelAsymId: 'A', labelSeqId: 69 },
|
|
|
- { labelAsymId: 'A', labelSeqId: 87, operatorName: 'ASM_4' }
|
|
|
- ],
|
|
|
+ config: {
|
|
|
+ props: {
|
|
|
+ kind: 'motif',
|
|
|
+ assemblyId: '1',
|
|
|
+ targets: [
|
|
|
+ { labelAsymId: 'A', labelSeqId: 61 },
|
|
|
+ { labelAsymId: 'A', labelSeqId: 69 },
|
|
|
+ { labelAsymId: 'A', labelSeqId: 87, operatorName: 'ASM_4' }
|
|
|
+ ],
|
|
|
+ }
|
|
|
}
|
|
|
},
|
|
|
{
|
|
|
id: '5VL5',
|
|
|
info: 'motif selection with strucmotif-expression: Coordination Chemistry within a Protein Host: Regulation of the Secondary Coordination Sphere',
|
|
|
- props: {
|
|
|
- kind: 'motif',
|
|
|
- assemblyId: '1',
|
|
|
- targets: [
|
|
|
- { labelAsymId: 'A', labelSeqId: 61 },
|
|
|
- { labelAsymId: 'A', labelSeqId: 69 },
|
|
|
- { labelAsymId: 'A', labelSeqId: 87, structOperId: '4' }
|
|
|
- ],
|
|
|
+ config: {
|
|
|
+ props: {
|
|
|
+ kind: 'motif',
|
|
|
+ assemblyId: '1',
|
|
|
+ targets: [
|
|
|
+ { labelAsymId: 'A', labelSeqId: 61 },
|
|
|
+ { labelAsymId: 'A', labelSeqId: 69 },
|
|
|
+ { labelAsymId: 'A', labelSeqId: 87, structOperId: '4' }
|
|
|
+ ],
|
|
|
+ }
|
|
|
}
|
|
|
},
|
|
|
{
|
|
|
id: '2BFU',
|
|
|
info: 'motif selection with strucmotif-expression: X-ray structure of CPMV top component',
|
|
|
- props: {
|
|
|
- kind: 'motif',
|
|
|
- assemblyId: '6',
|
|
|
- targets: [
|
|
|
- { labelAsymId: 'A', labelSeqId: 46, structOperId: 'X0x5' },
|
|
|
- { labelAsymId: 'A', labelSeqId: 49, structOperId: 'X0x5' },
|
|
|
- { labelAsymId: 'A', labelSeqId: 145, structOperId: 'X0x5' }
|
|
|
- ],
|
|
|
+ config: {
|
|
|
+ props: {
|
|
|
+ kind: 'motif',
|
|
|
+ assemblyId: '6',
|
|
|
+ targets: [
|
|
|
+ { labelAsymId: 'A', labelSeqId: 46, structOperId: 'X0x5' },
|
|
|
+ { labelAsymId: 'A', labelSeqId: 49, structOperId: 'X0x5' },
|
|
|
+ { labelAsymId: 'A', labelSeqId: 145, structOperId: 'X0x5' }
|
|
|
+ ],
|
|
|
+ }
|
|
|
}
|
|
|
},
|
|
|
{
|
|
|
id: '1G2F',
|
|
|
info: 'motif selection with strucmotif-expression & chain: STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6)',
|
|
|
- props: {
|
|
|
- kind: 'motif',
|
|
|
- targets: [
|
|
|
- { labelAsymId: 'F', labelSeqId: 7 },
|
|
|
- { labelAsymId: 'F', labelSeqId: 25 },
|
|
|
- { labelAsymId: 'F', labelSeqId: 29 }
|
|
|
- ],
|
|
|
+ config: {
|
|
|
+ props: {
|
|
|
+ kind: 'motif',
|
|
|
+ targets: [
|
|
|
+ { labelAsymId: 'F', labelSeqId: 7 },
|
|
|
+ { labelAsymId: 'F', labelSeqId: 25 },
|
|
|
+ { labelAsymId: 'F', labelSeqId: 29 }
|
|
|
+ ],
|
|
|
+ }
|
|
|
}
|
|
|
}
|
|
|
];
|
|
|
@@ -404,15 +436,15 @@
|
|
|
function superposed() {
|
|
|
viewer.clear()
|
|
|
.then(function() {
|
|
|
- return viewer.loadPdbId('3pqr', { kind: 'standard', assemblyId: '1' })
|
|
|
+ return viewer.loadPdbId('3pqr', { props: { kind: 'standard', assemblyId: '1' } })
|
|
|
})
|
|
|
.then(function() {
|
|
|
- return viewer.loadPdbId('1u19', { kind: 'standard', assemblyId: '1' }, [
|
|
|
+ return viewer.loadPdbId('1u19', { props: { kind: 'standard', assemblyId: '1' }, matrix: [
|
|
|
-0.67160917400372, 0.28222298510688404, 0.6850488398834855, 0,
|
|
|
0.13262098666685063, 0.9554691407700946, -0.26361033961856695, 0,
|
|
|
-0.7289399153866256, -0.08619120567473626, -0.6791305379047228, 0,
|
|
|
-7.602670654900173, -30.317901981509067, 24.605855585357773, 1
|
|
|
- ])
|
|
|
+ ] })
|
|
|
})
|
|
|
.then(function() {
|
|
|
viewer.resetCamera(0)
|
|
|
@@ -424,36 +456,40 @@
|
|
|
.then(function() {
|
|
|
return viewer.loadPdbIds([{
|
|
|
pdbId: '5CBG',
|
|
|
- props: {
|
|
|
- label: '5CBG',
|
|
|
- kind: 'motif',
|
|
|
- // assemblyId: '2', // library should be able to infer assemblyId of the query
|
|
|
- targets: [
|
|
|
- { labelAsymId: 'C', labelSeqId: 30, structOperId: '3' },
|
|
|
- { labelAsymId: 'C', labelSeqId: 32, structOperId: '3' },
|
|
|
- { labelAsymId: 'C', labelSeqId: 34, structOperId: '3' }
|
|
|
- ],
|
|
|
- // color: 13203230
|
|
|
+ config: {
|
|
|
+ props: {
|
|
|
+ label: '5CBG',
|
|
|
+ kind: 'motif',
|
|
|
+ // assemblyId: '2', // library should be able to infer assemblyId of the query
|
|
|
+ targets: [
|
|
|
+ { labelAsymId: 'C', labelSeqId: 30, structOperId: '3' },
|
|
|
+ { labelAsymId: 'C', labelSeqId: 32, structOperId: '3' },
|
|
|
+ { labelAsymId: 'C', labelSeqId: 34, structOperId: '3' }
|
|
|
+ ],
|
|
|
+ // color: 13203230
|
|
|
+ }
|
|
|
}
|
|
|
}, {
|
|
|
pdbId: '2W02',
|
|
|
- props: {
|
|
|
- label: '2W02 #1',
|
|
|
- kind: 'motif',
|
|
|
- assemblyId: '2',
|
|
|
- targets: [
|
|
|
- { labelAsymId: 'B', labelSeqId: 519 },
|
|
|
- { labelAsymId: 'B', labelSeqId: 517 },
|
|
|
- { labelAsymId: 'B', labelSeqId: 515 }
|
|
|
- ],
|
|
|
- // color: 4947916
|
|
|
- },
|
|
|
- matrix: [
|
|
|
- 0.7953831708253857, -0.6048923987758781, 0.03835097744411625, 0,
|
|
|
- -0.23732979915044658, -0.2525976533016715, 0.9380133218572628, 0,
|
|
|
- -0.5577097614377604, -0.7551818399893184, -0.344470913935246, 0,
|
|
|
- 154.77888998938096, 207.0215940587305, 25.17873980937774, 1
|
|
|
- ]
|
|
|
+ config: {
|
|
|
+ props: {
|
|
|
+ label: '2W02 #1',
|
|
|
+ kind: 'motif',
|
|
|
+ assemblyId: '2',
|
|
|
+ targets: [
|
|
|
+ { labelAsymId: 'B', labelSeqId: 519 },
|
|
|
+ { labelAsymId: 'B', labelSeqId: 517 },
|
|
|
+ { labelAsymId: 'B', labelSeqId: 515 }
|
|
|
+ ],
|
|
|
+ // color: 4947916
|
|
|
+ },
|
|
|
+ matrix: [
|
|
|
+ 0.7953831708253857, -0.6048923987758781, 0.03835097744411625, 0,
|
|
|
+ -0.23732979915044658, -0.2525976533016715, 0.9380133218572628, 0,
|
|
|
+ -0.5577097614377604, -0.7551818399893184, -0.344470913935246, 0,
|
|
|
+ 154.77888998938096, 207.0215940587305, 25.17873980937774, 1
|
|
|
+ ]
|
|
|
+ }
|
|
|
}]);
|
|
|
})
|
|
|
.then(function() {
|
|
|
@@ -466,36 +502,40 @@
|
|
|
.then(function() {
|
|
|
return viewer.loadPdbIds([{
|
|
|
pdbId: '1M4X',
|
|
|
- props: {
|
|
|
- label: '1M4X',
|
|
|
- kind: 'motif',
|
|
|
- // assemblyId: '7', // library should be able to infer assemblyId of the query
|
|
|
- targets: [
|
|
|
- { labelAsymId: 'C', labelSeqId: 161, structOperId: 'Px81' },
|
|
|
- { labelAsymId: 'C', labelSeqId: 165, structOperId: 'Px81' },
|
|
|
- { labelAsymId: 'C', labelSeqId: 170, structOperId: 'Px81' }
|
|
|
- ],
|
|
|
- // color: 13203230
|
|
|
+ config: {
|
|
|
+ props: {
|
|
|
+ label: '1M4X',
|
|
|
+ kind: 'motif',
|
|
|
+ // assemblyId: '7', // library should be able to infer assemblyId of the query
|
|
|
+ targets: [
|
|
|
+ { labelAsymId: 'C', labelSeqId: 161, structOperId: 'Px81' },
|
|
|
+ { labelAsymId: 'C', labelSeqId: 165, structOperId: 'Px81' },
|
|
|
+ { labelAsymId: 'C', labelSeqId: 170, structOperId: 'Px81' }
|
|
|
+ ],
|
|
|
+ // color: 13203230
|
|
|
+ }
|
|
|
}
|
|
|
}, {
|
|
|
pdbId: '6KIN',
|
|
|
- props: {
|
|
|
- label: '6KIN @ 1.88 RMSD',
|
|
|
- kind: 'motif',
|
|
|
- assemblyId: '1',
|
|
|
- targets: [
|
|
|
- { labelAsymId: 'B', labelSeqId: 160 },
|
|
|
- { labelAsymId: 'B', labelSeqId: 163 },
|
|
|
- { labelAsymId: 'B', labelSeqId: 167 }
|
|
|
- ],
|
|
|
- // color: 13203230
|
|
|
- },
|
|
|
- matrix: [
|
|
|
- -0.8175763932146345, -0.5719837107806522, 0.0663586909134339, 0,
|
|
|
- -0.4927708198934652, 0.7546183669143351, 0.43327593907008527, 0,
|
|
|
- -0.29790226638894773, 0.32153655300313416, -0.8988150448024284, 0,
|
|
|
- 340.5134831570596, -107.81055538151446, 774.3972821273203, 1.0
|
|
|
- ]
|
|
|
+ config: {
|
|
|
+ props: {
|
|
|
+ label: '6KIN @ 1.88 RMSD',
|
|
|
+ kind: 'motif',
|
|
|
+ assemblyId: '1',
|
|
|
+ targets: [
|
|
|
+ { labelAsymId: 'B', labelSeqId: 160 },
|
|
|
+ { labelAsymId: 'B', labelSeqId: 163 },
|
|
|
+ { labelAsymId: 'B', labelSeqId: 167 }
|
|
|
+ ],
|
|
|
+ // color: 13203230
|
|
|
+ },
|
|
|
+ matrix: [
|
|
|
+ -0.8175763932146345, -0.5719837107806522, 0.0663586909134339, 0,
|
|
|
+ -0.4927708198934652, 0.7546183669143351, 0.43327593907008527, 0,
|
|
|
+ -0.29790226638894773, 0.32153655300313416, -0.8988150448024284, 0,
|
|
|
+ 340.5134831570596, -107.81055538151446, 774.3972821273203, 1.0
|
|
|
+ ]
|
|
|
+ }
|
|
|
}]);
|
|
|
})
|
|
|
.then(function() {
|
|
|
@@ -508,27 +548,45 @@
|
|
|
.then(function () {
|
|
|
return viewer.loadPdbIds([{
|
|
|
pdbId: '4HHB',
|
|
|
- props: {
|
|
|
- kind: 'prop-set',
|
|
|
- representation: [{
|
|
|
- name: 'color',
|
|
|
+ config: {
|
|
|
+ props: {
|
|
|
+ kind: 'prop-set',
|
|
|
+ representation: [{
|
|
|
+ name: 'color',
|
|
|
+ targets: [{
|
|
|
+ labelAsymId: 'A',
|
|
|
+ labelSeqRange: { beg: 4, end: 141 }
|
|
|
+ }],
|
|
|
+ value: 13203230
|
|
|
+ }],
|
|
|
targets: [{
|
|
|
labelAsymId: 'A',
|
|
|
labelSeqRange: { beg: 4, end: 141 }
|
|
|
- }],
|
|
|
- value: 13203230
|
|
|
- }],
|
|
|
- targets: [{
|
|
|
- labelAsymId: 'A',
|
|
|
- labelSeqRange: { beg: 4, end: 141 }
|
|
|
- }]
|
|
|
+ }]
|
|
|
+ }
|
|
|
}
|
|
|
}, {
|
|
|
pdbId: '1OJ6',
|
|
|
- props: {
|
|
|
- kind: 'prop-set',
|
|
|
- representation: [{
|
|
|
- name: 'color',
|
|
|
+ config: {
|
|
|
+ props: {
|
|
|
+ kind: 'prop-set',
|
|
|
+ representation: [{
|
|
|
+ name: 'color',
|
|
|
+ targets: [{
|
|
|
+ labelAsymId: 'A',
|
|
|
+ labelSeqRange: { beg: 3, end: 44 }
|
|
|
+ }, {
|
|
|
+ labelAsymId: 'A',
|
|
|
+ labelSeqRange: { beg: 48, end: 49 }
|
|
|
+ }, {
|
|
|
+ labelAsymId: 'A',
|
|
|
+ labelSeqRange: { beg: 54, end: 95 }
|
|
|
+ }, {
|
|
|
+ labelAsymId: 'A',
|
|
|
+ labelSeqRange: { beg: 98, end: 149 }
|
|
|
+ }],
|
|
|
+ value: 4947916
|
|
|
+ }],
|
|
|
targets: [{
|
|
|
labelAsymId: 'A',
|
|
|
labelSeqRange: { beg: 3, end: 44 }
|
|
|
@@ -541,29 +599,15 @@
|
|
|
}, {
|
|
|
labelAsymId: 'A',
|
|
|
labelSeqRange: { beg: 98, end: 149 }
|
|
|
- }],
|
|
|
- value: 4947916
|
|
|
- }],
|
|
|
- targets: [{
|
|
|
- labelAsymId: 'A',
|
|
|
- labelSeqRange: { beg: 3, end: 44 }
|
|
|
- }, {
|
|
|
- labelAsymId: 'A',
|
|
|
- labelSeqRange: { beg: 48, end: 49 }
|
|
|
- }, {
|
|
|
- labelAsymId: 'A',
|
|
|
- labelSeqRange: { beg: 54, end: 95 }
|
|
|
- }, {
|
|
|
- labelAsymId: 'A',
|
|
|
- labelSeqRange: { beg: 98, end: 149 }
|
|
|
- }]
|
|
|
- },
|
|
|
- matrix: [
|
|
|
- -0.6263111483773867, -0.38259812283613237, -0.6792297268380318, 0.0,
|
|
|
- 0.3014888059527303, 0.6846150421427817, -0.6636314820418288, 0.0,
|
|
|
- 0.7189150473480135, -0.6204199549290021, -0.313432982027257, 0.0,
|
|
|
- -30.829713890311414, 24.04442469172666, 55.437150645037654, 1.0
|
|
|
- ]
|
|
|
+ }]
|
|
|
+ },
|
|
|
+ matrix: [
|
|
|
+ -0.6263111483773867, -0.38259812283613237, -0.6792297268380318, 0.0,
|
|
|
+ 0.3014888059527303, 0.6846150421427817, -0.6636314820418288, 0.0,
|
|
|
+ 0.7189150473480135, -0.6204199549290021, -0.313432982027257, 0.0,
|
|
|
+ -30.829713890311414, 24.04442469172666, 55.437150645037654, 1.0
|
|
|
+ ]
|
|
|
+ }
|
|
|
}]);
|
|
|
})
|
|
|
.then(function () {
|
JonStargaryen