moved DefaultPluginSpec to spec.ts

src/apps/docking-viewer/index.ts

@@ -6,7 +6,8 @@
  */
 
 import '../../mol-util/polyfill';
-import { createPlugin, DefaultPluginSpec } from '../../mol-plugin';
+import { createPlugin } from '../../mol-plugin';
+import { DefaultPluginSpec } from '../../mol-plugin/spec';
 import './index.html';
 import { PluginContext } from '../../mol-plugin/context';
 import { PluginCommands } from '../../mol-plugin/commands';

src/apps/viewer/index.ts

@@ -6,7 +6,8 @@
  */
 
 import '../../mol-util/polyfill';
-import { createPlugin, DefaultPluginSpec } from '../../mol-plugin';
+import { createPlugin } from '../../mol-plugin';
+import { DefaultPluginSpec } from '../../mol-plugin/spec';
 import './index.html';
 import './embedded.html';
 import './favicon.ico';

src/examples/alpha-orbitals/index.ts

@@ -6,7 +6,8 @@
 
 import { SphericalBasisOrder } from '../../extensions/alpha-orbitals/spherical-functions';
 import { BasisAndOrbitals, CreateOrbitalDensityVolume, CreateOrbitalRepresentation3D, CreateOrbitalVolume, StaticBasisAndOrbitals } from '../../extensions/alpha-orbitals/transforms';
-import { createPluginAsync, DefaultPluginSpec } from '../../mol-plugin';
+import { createPluginAsync } from '../../mol-plugin';
+import { DefaultPluginSpec } from '../../mol-plugin/spec';
 import { PluginStateObject } from '../../mol-plugin-state/objects';
 import { PluginConfig } from '../../mol-plugin/config';
 import { PluginContext } from '../../mol-plugin/context';

src/examples/basic-wrapper/index.ts

@@ -6,7 +6,8 @@
 
 import { EmptyLoci } from '../../mol-model/loci';
 import { StructureSelection } from '../../mol-model/structure';
-import { createPlugin, DefaultPluginSpec } from '../../mol-plugin';
+import { createPlugin } from '../../mol-plugin';
+import { DefaultPluginSpec } from '../../mol-plugin/spec';
 import { AnimateModelIndex } from '../../mol-plugin-state/animation/built-in/model-index';
 import { BuiltInTrajectoryFormat } from '../../mol-plugin-state/formats/trajectory';
 import { PluginCommands } from '../../mol-plugin/commands';

src/examples/lighting/index.ts

@@ -5,7 +5,8 @@
  */
 
 import { Canvas3DProps } from '../../mol-canvas3d/canvas3d';
-import { createPlugin, DefaultPluginSpec } from '../../mol-plugin';
+import { createPlugin } from '../../mol-plugin';
+import { DefaultPluginSpec } from '../../mol-plugin/spec';
 import { BuiltInTrajectoryFormat } from '../../mol-plugin-state/formats/trajectory';
 import { PluginCommands } from '../../mol-plugin/commands';
 import { PluginContext } from '../../mol-plugin/context';

src/examples/proteopedia-wrapper/index.ts

@@ -6,7 +6,8 @@
 
 import * as ReactDOM from 'react-dom';
 import { Canvas3DProps, DefaultCanvas3DParams } from '../../mol-canvas3d/canvas3d';
-import { createPlugin, DefaultPluginSpec } from '../../mol-plugin';
+import { createPlugin } from '../../mol-plugin';
+import { DefaultPluginSpec } from '../../mol-plugin/spec';
 import { AnimateModelIndex } from '../../mol-plugin-state/animation/built-in/model-index';
 import { createStructureRepresentationParams } from '../../mol-plugin-state/helpers/structure-representation-params';
 import { PluginStateObject, PluginStateObject as PSO } from '../../mol-plugin-state/objects';

src/mol-plugin/index.ts

@@ -7,93 +7,9 @@
 
 import * as React from 'react';
 import * as ReactDOM from 'react-dom';
-import { StateActions } from '../mol-plugin-state/actions';
-import { StateTransforms } from '../mol-plugin-state/transforms';
-import { VolumeStreamingCustomControls } from '../mol-plugin-ui/custom/volume';
 import { Plugin } from '../mol-plugin-ui/plugin';
-import { PluginBehaviors } from './behavior';
-import { StructureFocusRepresentation } from './behavior/dynamic/selection/structure-focus-representation';
-import { BoxifyVolumeStreaming, CreateVolumeStreamingBehavior, InitVolumeStreaming } from './behavior/dynamic/volume-streaming/transformers';
 import { PluginContext } from './context';
-import { PluginSpec } from './spec';
-import { AssignColorVolume } from '../mol-plugin-state/actions/volume';
-import { AnimateModelIndex } from '../mol-plugin-state/animation/built-in/model-index';
-import { AnimateAssemblyUnwind } from '../mol-plugin-state/animation/built-in/assembly-unwind';
-import { AnimateCameraSpin } from '../mol-plugin-state/animation/built-in/camera-spin';
-import { AnimateStateSnapshots } from '../mol-plugin-state/animation/built-in/state-snapshots';
-
-export const DefaultPluginSpec = (): PluginSpec => ({
-    actions: [
-        PluginSpec.Action(StateActions.Structure.DownloadStructure),
-        PluginSpec.Action(StateActions.Structure.AddTrajectory),
-        PluginSpec.Action(StateActions.Volume.DownloadDensity),
-        PluginSpec.Action(StateActions.DataFormat.DownloadFile),
-        PluginSpec.Action(StateActions.DataFormat.OpenFiles),
-        PluginSpec.Action(StateActions.Structure.EnableModelCustomProps),
-        PluginSpec.Action(StateActions.Structure.EnableStructureCustomProps),
-
-        // Volume streaming
-        PluginSpec.Action(InitVolumeStreaming),
-        PluginSpec.Action(BoxifyVolumeStreaming),
-        PluginSpec.Action(CreateVolumeStreamingBehavior),
-
-        PluginSpec.Action(StateTransforms.Data.Download),
-        PluginSpec.Action(StateTransforms.Data.ParseCif),
-        PluginSpec.Action(StateTransforms.Data.ParseCcp4),
-        PluginSpec.Action(StateTransforms.Data.ParseDsn6),
-
-        PluginSpec.Action(StateTransforms.Model.TrajectoryFromMmCif),
-        PluginSpec.Action(StateTransforms.Model.TrajectoryFromCifCore),
-        PluginSpec.Action(StateTransforms.Model.TrajectoryFromPDB),
-        PluginSpec.Action(StateTransforms.Model.TransformStructureConformation),
-        PluginSpec.Action(StateTransforms.Model.StructureFromModel),
-        PluginSpec.Action(StateTransforms.Model.StructureFromTrajectory),
-        PluginSpec.Action(StateTransforms.Model.ModelFromTrajectory),
-        PluginSpec.Action(StateTransforms.Model.StructureSelectionFromScript),
-        PluginSpec.Action(StateTransforms.Representation.StructureRepresentation3D),
-        PluginSpec.Action(StateTransforms.Representation.StructureSelectionsDistance3D),
-        PluginSpec.Action(StateTransforms.Representation.StructureSelectionsAngle3D),
-        PluginSpec.Action(StateTransforms.Representation.StructureSelectionsDihedral3D),
-        PluginSpec.Action(StateTransforms.Representation.StructureSelectionsLabel3D),
-        PluginSpec.Action(StateTransforms.Representation.StructureSelectionsOrientation3D),
-        PluginSpec.Action(StateTransforms.Representation.ModelUnitcell3D),
-        PluginSpec.Action(StateTransforms.Representation.ExplodeStructureRepresentation3D),
-        PluginSpec.Action(StateTransforms.Representation.UnwindStructureAssemblyRepresentation3D),
-        PluginSpec.Action(StateTransforms.Representation.OverpaintStructureRepresentation3DFromScript),
-        PluginSpec.Action(StateTransforms.Representation.TransparencyStructureRepresentation3DFromScript),
-
-        PluginSpec.Action(AssignColorVolume),
-        PluginSpec.Action(StateTransforms.Volume.VolumeFromCcp4),
-        PluginSpec.Action(StateTransforms.Volume.VolumeFromDsn6),
-        PluginSpec.Action(StateTransforms.Volume.VolumeFromCube),
-        PluginSpec.Action(StateTransforms.Volume.VolumeFromDx),
-        PluginSpec.Action(StateTransforms.Representation.VolumeRepresentation3D),
-    ],
-    behaviors: [
-        PluginSpec.Behavior(PluginBehaviors.Representation.HighlightLoci),
-        PluginSpec.Behavior(PluginBehaviors.Representation.SelectLoci),
-        PluginSpec.Behavior(PluginBehaviors.Representation.DefaultLociLabelProvider),
-        PluginSpec.Behavior(PluginBehaviors.Representation.FocusLoci),
-        PluginSpec.Behavior(PluginBehaviors.Camera.FocusLoci),
-        PluginSpec.Behavior(StructureFocusRepresentation),
-
-        PluginSpec.Behavior(PluginBehaviors.CustomProps.StructureInfo),
-        PluginSpec.Behavior(PluginBehaviors.CustomProps.AccessibleSurfaceArea),
-        PluginSpec.Behavior(PluginBehaviors.CustomProps.Interactions),
-        PluginSpec.Behavior(PluginBehaviors.CustomProps.SecondaryStructure),
-        PluginSpec.Behavior(PluginBehaviors.CustomProps.ValenceModel),
-        PluginSpec.Behavior(PluginBehaviors.CustomProps.CrossLinkRestraint),
-    ],
-    customParamEditors: [
-        [CreateVolumeStreamingBehavior, VolumeStreamingCustomControls]
-    ],
-    animations: [
-        AnimateModelIndex,
-        AnimateCameraSpin,
-        AnimateStateSnapshots,
-        AnimateAssemblyUnwind
-    ]
-});
+import { DefaultPluginSpec, PluginSpec } from './spec';
 
 export function createPlugin(target: HTMLElement, spec?: PluginSpec): PluginContext {
     const ctx = new PluginContext(spec || DefaultPluginSpec());

src/mol-plugin/spec.ts

@@ -12,6 +12,17 @@ import { PluginStateAnimation } from '../mol-plugin-state/animation/model';
 import { PluginConfigItem } from './config';
 import { PartialCanvas3DProps } from '../mol-canvas3d/canvas3d';
 import { DataFormatProvider } from '../mol-plugin-state/formats/provider';
+import { StateActions } from '../mol-plugin-state/actions';
+import { StateTransforms } from '../mol-plugin-state/transforms';
+import { VolumeStreamingCustomControls } from '../mol-plugin-ui/custom/volume';
+import { PluginBehaviors } from './behavior';
+import { StructureFocusRepresentation } from './behavior/dynamic/selection/structure-focus-representation';
+import { BoxifyVolumeStreaming, CreateVolumeStreamingBehavior, InitVolumeStreaming } from './behavior/dynamic/volume-streaming/transformers';
+import { AssignColorVolume } from '../mol-plugin-state/actions/volume';
+import { AnimateModelIndex } from '../mol-plugin-state/animation/built-in/model-index';
+import { AnimateAssemblyUnwind } from '../mol-plugin-state/animation/built-in/assembly-unwind';
+import { AnimateCameraSpin } from '../mol-plugin-state/animation/built-in/camera-spin';
+import { AnimateStateSnapshots } from '../mol-plugin-state/animation/built-in/state-snapshots';
 
 export { PluginSpec };
 
@@ -64,4 +75,77 @@ namespace PluginSpec {
         right?: React.ComponentClass | 'none',
         bottom?: React.ComponentClass | 'none'
     }
-}
+}
+
+export const DefaultPluginSpec = (): PluginSpec => ({
+    actions: [
+        PluginSpec.Action(StateActions.Structure.DownloadStructure),
+        PluginSpec.Action(StateActions.Structure.AddTrajectory),
+        PluginSpec.Action(StateActions.Volume.DownloadDensity),
+        PluginSpec.Action(StateActions.DataFormat.DownloadFile),
+        PluginSpec.Action(StateActions.DataFormat.OpenFiles),
+        PluginSpec.Action(StateActions.Structure.EnableModelCustomProps),
+        PluginSpec.Action(StateActions.Structure.EnableStructureCustomProps),
+
+        // Volume streaming
+        PluginSpec.Action(InitVolumeStreaming),
+        PluginSpec.Action(BoxifyVolumeStreaming),
+        PluginSpec.Action(CreateVolumeStreamingBehavior),
+
+        PluginSpec.Action(StateTransforms.Data.Download),
+        PluginSpec.Action(StateTransforms.Data.ParseCif),
+        PluginSpec.Action(StateTransforms.Data.ParseCcp4),
+        PluginSpec.Action(StateTransforms.Data.ParseDsn6),
+
+        PluginSpec.Action(StateTransforms.Model.TrajectoryFromMmCif),
+        PluginSpec.Action(StateTransforms.Model.TrajectoryFromCifCore),
+        PluginSpec.Action(StateTransforms.Model.TrajectoryFromPDB),
+        PluginSpec.Action(StateTransforms.Model.TransformStructureConformation),
+        PluginSpec.Action(StateTransforms.Model.StructureFromModel),
+        PluginSpec.Action(StateTransforms.Model.StructureFromTrajectory),
+        PluginSpec.Action(StateTransforms.Model.ModelFromTrajectory),
+        PluginSpec.Action(StateTransforms.Model.StructureSelectionFromScript),
+        PluginSpec.Action(StateTransforms.Representation.StructureRepresentation3D),
+        PluginSpec.Action(StateTransforms.Representation.StructureSelectionsDistance3D),
+        PluginSpec.Action(StateTransforms.Representation.StructureSelectionsAngle3D),
+        PluginSpec.Action(StateTransforms.Representation.StructureSelectionsDihedral3D),
+        PluginSpec.Action(StateTransforms.Representation.StructureSelectionsLabel3D),
+        PluginSpec.Action(StateTransforms.Representation.StructureSelectionsOrientation3D),
+        PluginSpec.Action(StateTransforms.Representation.ModelUnitcell3D),
+        PluginSpec.Action(StateTransforms.Representation.ExplodeStructureRepresentation3D),
+        PluginSpec.Action(StateTransforms.Representation.UnwindStructureAssemblyRepresentation3D),
+        PluginSpec.Action(StateTransforms.Representation.OverpaintStructureRepresentation3DFromScript),
+        PluginSpec.Action(StateTransforms.Representation.TransparencyStructureRepresentation3DFromScript),
+
+        PluginSpec.Action(AssignColorVolume),
+        PluginSpec.Action(StateTransforms.Volume.VolumeFromCcp4),
+        PluginSpec.Action(StateTransforms.Volume.VolumeFromDsn6),
+        PluginSpec.Action(StateTransforms.Volume.VolumeFromCube),
+        PluginSpec.Action(StateTransforms.Volume.VolumeFromDx),
+        PluginSpec.Action(StateTransforms.Representation.VolumeRepresentation3D),
+    ],
+    behaviors: [
+        PluginSpec.Behavior(PluginBehaviors.Representation.HighlightLoci),
+        PluginSpec.Behavior(PluginBehaviors.Representation.SelectLoci),
+        PluginSpec.Behavior(PluginBehaviors.Representation.DefaultLociLabelProvider),
+        PluginSpec.Behavior(PluginBehaviors.Representation.FocusLoci),
+        PluginSpec.Behavior(PluginBehaviors.Camera.FocusLoci),
+        PluginSpec.Behavior(StructureFocusRepresentation),
+
+        PluginSpec.Behavior(PluginBehaviors.CustomProps.StructureInfo),
+        PluginSpec.Behavior(PluginBehaviors.CustomProps.AccessibleSurfaceArea),
+        PluginSpec.Behavior(PluginBehaviors.CustomProps.Interactions),
+        PluginSpec.Behavior(PluginBehaviors.CustomProps.SecondaryStructure),
+        PluginSpec.Behavior(PluginBehaviors.CustomProps.ValenceModel),
+        PluginSpec.Behavior(PluginBehaviors.CustomProps.CrossLinkRestraint),
+    ],
+    customParamEditors: [
+        [CreateVolumeStreamingBehavior, VolumeStreamingCustomControls]
+    ],
+    animations: [
+        AnimateModelIndex,
+        AnimateCameraSpin,
+        AnimateStateSnapshots,
+        AnimateAssemblyUnwind
+    ]
+});