/** * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info. * * @author David Sehnal */ import { OrderedSet } from '../../../mol-data/int'; import { StructureQualityReport, StructureQualityReportProvider } from './prop'; import { StructureQualityReportColorThemeProvider } from './color'; import { Loci } from '../../../mol-model/loci'; import { StructureElement } from '../../../mol-model/structure'; import { ParamDefinition as PD } from '../../../mol-util/param-definition'; import { PluginBehavior } from '../../../mol-plugin/behavior/behavior'; export const PDBeStructureQualityReport = PluginBehavior.create<{ autoAttach: boolean, showTooltip: boolean }>({ name: 'pdbe-structure-quality-report-prop', category: 'custom-props', display: { name: 'Structure Quality Report', description: 'Data from wwPDB Validation Report, obtained via PDBe.' }, ctor: class extends PluginBehavior.Handler<{ autoAttach: boolean, showTooltip: boolean }> { private provider = StructureQualityReportProvider private labelPDBeValidation = { label: (loci: Loci): string | undefined => { if (!this.params.showTooltip) return void 0; switch (loci.kind) { case 'element-loci': if (loci.elements.length === 0) return void 0; const e = loci.elements[0]; const u = e.unit; if (!u.model.customProperties.hasReference(StructureQualityReportProvider.descriptor)) return void 0; const se = StructureElement.Location.create(loci.structure, u, u.elements[OrderedSet.getAt(e.indices, 0)]); const issues = StructureQualityReport.getIssues(se); if (issues.length === 0) return 'Validation: No Issues'; return `Validation: ${issues.join(', ')}`; default: return void 0; } } } register(): void { this.ctx.customModelProperties.register(this.provider, this.params.autoAttach); this.ctx.managers.lociLabels.addProvider(this.labelPDBeValidation); this.ctx.representation.structure.themes.colorThemeRegistry.add(StructureQualityReportColorThemeProvider); } update(p: { autoAttach: boolean, showTooltip: boolean }) { let updated = this.params.autoAttach !== p.autoAttach; this.params.autoAttach = p.autoAttach; this.params.showTooltip = p.showTooltip; this.ctx.customModelProperties.setDefaultAutoAttach(this.provider.descriptor.name, this.params.autoAttach); return updated; } unregister() { this.ctx.customModelProperties.unregister(StructureQualityReportProvider.descriptor.name); this.ctx.managers.lociLabels.removeProvider(this.labelPDBeValidation); this.ctx.representation.structure.themes.colorThemeRegistry.remove(StructureQualityReportColorThemeProvider); } }, params: () => ({ autoAttach: PD.Boolean(false), showTooltip: PD.Boolean(true) }) });