/** * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info. * * @author Alexander Rose */ import { StructureElement, Bond, ElementIndex, Unit, Model } from '../../mol-model/structure'; import { SaccharideColors, MonosaccharidesColorTable } from '../../mol-model/structure/structure/carbohydrates/constants'; import { Location } from '../../mol-model/location'; import { ColorTheme, LocationColor } from '../color'; import { Color } from '../../mol-util/color'; import { ParamDefinition as PD } from '../../mol-util/param-definition'; import { ThemeDataContext } from '../theme'; import { TableLegend } from '../../mol-util/legend'; const DefaultColor = Color(0xCCCCCC); const Description = 'Assigns colors according to the Symbol Nomenclature for Glycans (SNFG).'; export const CarbohydrateSymbolColorThemeParams = { }; export type CarbohydrateSymbolColorThemeParams = typeof CarbohydrateSymbolColorThemeParams export function getCarbohydrateSymbolColorThemeParams(ctx: ThemeDataContext) { return CarbohydrateSymbolColorThemeParams; // TODO return copy } export function CarbohydrateSymbolColorTheme(ctx: ThemeDataContext, props: PD.Values): ColorTheme { let color: LocationColor; if (ctx.structure) { const { elements, getElementIndices } = ctx.structure.carbohydrates; const getColor = (unit: Unit, index: ElementIndex) => { if (!Unit.isAtomic(unit)) return DefaultColor; const carbs = getElementIndices(unit, index); return carbs.length > 0 ? elements[carbs[0]].component.color : DefaultColor; }; color = (location: Location, isSecondary: boolean) => { if (isSecondary) { return SaccharideColors.Secondary; } else { if (StructureElement.Location.is(location)) { return getColor(location.unit, location.element); } else if (Bond.isLocation(location)) { return getColor(location.aUnit, location.aUnit.elements[location.aIndex]); } } return DefaultColor; }; } else { color = () => DefaultColor; } return { factory: CarbohydrateSymbolColorTheme, granularity: 'group', color: color, props: props, description: Description, legend: TableLegend(MonosaccharidesColorTable) }; } export const CarbohydrateSymbolColorThemeProvider: ColorTheme.Provider = { name: 'carbohydrate-symbol', label: 'Carbohydrate Symbol', category: ColorTheme.Category.Residue, factory: CarbohydrateSymbolColorTheme, getParams: getCarbohydrateSymbolColorThemeParams, defaultValues: PD.getDefaultValues(CarbohydrateSymbolColorThemeParams), isApplicable: (ctx: ThemeDataContext) => { return !!ctx.structure && ctx.structure.models.some(m => Model.hasCarbohydrate(m)); } };