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RcsbFv3DAssembly._internal_.AtomicConformation.html

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  1. <!DOCTYPE html><html class="default"><head><meta charSet="utf-8"/><meta http-equiv="x-ua-compatible" content="IE=edge"/><title>AtomicConformation | @rcsb/rcsb-saguaro-3d</title><meta name="description" content="Documentation for @rcsb/rcsb-saguaro-3d"/><meta name="viewport" content="width=device-width, initial-scale=1"/><link rel="stylesheet" href="../assets/style.css"/><link rel="stylesheet" href="../assets/highlight.css"/><script async src="../assets/search.js" id="search-script"></script></head><body><script>document.body.classList.add(localStorage.getItem("tsd-theme") || "os")</script><header><div class="tsd-page-toolbar"><div class="container"><div class="table-wrap"><div class="table-cell" id="tsd-search" data-base=".."><div class="field"><label for="tsd-search-field" class="tsd-widget search no-caption">Search</label><input type="text" id="tsd-search-field"/></div><ul class="results"><li class="state loading">Preparing search index...</li><li class="state failure">The search index is not available</li></ul><a href="../index.html" class="title">@rcsb/rcsb-saguaro-3d</a></div><div class="table-cell" id="tsd-widgets"><div id="tsd-filter"><a href="#" class="tsd-widget options no-caption" data-toggle="options">Options</a><div class="tsd-filter-group"><div class="tsd-select" id="tsd-filter-visibility"><span class="tsd-select-label">All</span><ul class="tsd-select-list"><li data-value="public">Public</li><li data-value="protected">Public/Protected</li><li data-value="private" class="selected">All</li></ul></div> <input type="checkbox" id="tsd-filter-inherited" checked/><label class="tsd-widget" for="tsd-filter-inherited">Inherited</label><input type="checkbox" id="tsd-filter-externals" checked/><label class="tsd-widget" for="tsd-filter-externals">Externals</label></div></div><a href="#" class="tsd-widget menu no-caption" data-toggle="menu">Menu</a></div></div></div></div><div class="tsd-page-title"><div class="container"><ul class="tsd-breadcrumb"><li><a href="../modules.html">@rcsb/rcsb-saguaro-3d</a></li><li><a href="../modules/RcsbFv3DAssembly.html">RcsbFv3DAssembly</a></li><li><a href="../modules/RcsbFv3DAssembly._internal_.html">&lt;internal&gt;</a></li><li><a href="RcsbFv3DAssembly._internal_.AtomicConformation.html">AtomicConformation</a></li></ul><h1>Interface AtomicConformation </h1></div></div></header><div class="container container-main"><div class="row"><div class="col-8 col-content"><section class="tsd-panel tsd-hierarchy"><h3>Hierarchy</h3><ul class="tsd-hierarchy"><li><span class="target">AtomicConformation</span></li></ul></section><section class="tsd-panel-group tsd-index-group"><h2>Index</h2><section class="tsd-panel tsd-index-panel"><div class="tsd-index-content"><section class="tsd-index-section tsd-is-external"><h3>Properties</h3><ul class="tsd-index-list"><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.AtomicConformation.html#B_iso_or_equiv" class="tsd-kind-icon">B_<wbr/>iso_<wbr/>or_<wbr/>equiv</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.AtomicConformation.html#atomId" class="tsd-kind-icon">atom<wbr/>Id</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.AtomicConformation.html#id" class="tsd-kind-icon">id</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.AtomicConformation.html#occupancy" class="tsd-kind-icon">occupancy</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.AtomicConformation.html#x" class="tsd-kind-icon">x</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.AtomicConformation.html#xyzDefined" class="tsd-kind-icon">xyz<wbr/>Defined</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.AtomicConformation.html#y" class="tsd-kind-icon">y</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.AtomicConformation.html#z" class="tsd-kind-icon">z</a></li></ul></section></div></section></section><section class="tsd-panel-group tsd-member-group tsd-is-external"><h2>Properties</h2><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="B_iso_or_equiv" class="tsd-anchor"></a><h3 class="tsd-anchor-link">B_<wbr/>iso_<wbr/>or_<wbr/>equiv<a href="#B_iso_or_equiv" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">B_<wbr/>iso_<wbr/>or_<wbr/>equiv<span class="tsd-signature-symbol">:</span> <a href="RcsbFv3DAssembly._internal_.Column-1.html" class="tsd-signature-type" data-tsd-kind="Interface">Column</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/molstar/lib/mol-model/structure/model/properties/atomic/conformation.d.ts:24</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
    2. 

  2. <p>Isotropic atomic displacement parameter, or equivalent isotropic atomic displacement parameter,
    3. 

  3. B<del>eq</del>, calculated from the anisotropic displacement parameters.</p>
    4. 

  4. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="atomId" class="tsd-anchor"></a><h3 class="tsd-anchor-link">atom<wbr/>Id<a href="#atomId" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">atom<wbr/>Id<span class="tsd-signature-symbol">:</span> <a href="RcsbFv3DAssembly._internal_.Column-1.html" class="tsd-signature-type" data-tsd-kind="Interface">Column</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/molstar/lib/mol-model/structure/model/properties/atomic/conformation.d.ts:14</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
    5. 

  5. <p>Uniquely identifies an atom, i.e. even accross models in a mmCIF file.</p>
    6. 

  6. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="id" class="tsd-anchor"></a><h3 class="tsd-anchor-link">id<a href="#id" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">id<span class="tsd-signature-symbol">:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html#UUID-1" class="tsd-signature-type" data-tsd-kind="Type alias">UUID</a></div><aside class="tsd-sources"><ul><li>Defined in node_modules/molstar/lib/mol-model/structure/model/properties/atomic/conformation.d.ts:10</li></ul></aside></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="occupancy" class="tsd-anchor"></a><h3 class="tsd-anchor-link">occupancy<a href="#occupancy" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">occupancy<span class="tsd-signature-symbol">:</span> <a href="RcsbFv3DAssembly._internal_.Column-1.html" class="tsd-signature-type" data-tsd-kind="Interface">Column</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/molstar/lib/mol-model/structure/model/properties/atomic/conformation.d.ts:19</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
    7. 

  7. <p>The fraction of the atom type present at this site. The sum of the occupancies of all the atom types
    8. 

  8. at this site may not significantly exceed 1.0 unless it is a dummy site.</p>
    9. 

  9. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="x" class="tsd-anchor"></a><h3 class="tsd-anchor-link">x<a href="#x" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">x<span class="tsd-signature-symbol">:</span> <a href="RcsbFv3DAssembly._internal_.ArrayLike.html" class="tsd-signature-type" data-tsd-kind="Interface">ArrayLike</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/molstar/lib/mol-model/structure/model/properties/atomic/conformation.d.ts:32</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
    10. 

  10. <p>The x coordinate in angstroms specified according to a set of orthogonal Cartesian axes.</p>
    11. 

  11. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="xyzDefined" class="tsd-anchor"></a><h3 class="tsd-anchor-link">xyz<wbr/>Defined<a href="#xyzDefined" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">xyz<wbr/>Defined<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">boolean</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/molstar/lib/mol-model/structure/model/properties/atomic/conformation.d.ts:28</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
    12. 

  12. <p>Are xyz coordinates defined?</p>
    13. 

  13. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="y" class="tsd-anchor"></a><h3 class="tsd-anchor-link">y<a href="#y" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">y<span class="tsd-signature-symbol">:</span> <a href="RcsbFv3DAssembly._internal_.ArrayLike.html" class="tsd-signature-type" data-tsd-kind="Interface">ArrayLike</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/molstar/lib/mol-model/structure/model/properties/atomic/conformation.d.ts:36</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
    14. 

  14. <p>The y coordinate in angstroms specified according to a set of orthogonal Cartesian axes.</p>
    15. 

  15. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="z" class="tsd-anchor"></a><h3 class="tsd-anchor-link">z<a href="#z" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">z<span class="tsd-signature-symbol">:</span> <a href="RcsbFv3DAssembly._internal_.ArrayLike.html" class="tsd-signature-type" data-tsd-kind="Interface">ArrayLike</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/molstar/lib/mol-model/structure/model/properties/atomic/conformation.d.ts:40</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
    16. 

  16. <p>The z coordinate in angstroms specified according to a set of orthogonal Cartesian axes.</p>
    17. 

  17. </div></div></section></section></div><div class="col-4 col-menu menu-sticky-wrap menu-highlight"><nav class="tsd-navigation primary"><ul><li class=""><a href="../modules.html">Modules</a></li><li class="current tsd-kind-module"><a href="../modules/RcsbFv3DAssembly.html">Rcsb<wbr/>Fv3DAssembly</a><ul><li class="current tsd-kind-namespace tsd-parent-kind-module"><a href="../modules/RcsbFv3DAssembly._internal_.html">&lt;internal&gt;</a><ul><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.__Users_joan_devel_rcsb_saguaro_3d_node_modules_molstar_lib_mol_geo_geometry_text_font_atlas_.html">&quot;/<wbr/>Users/joan/devel/rcsb-<wbr/>saguaro-<wbr/>3d/node_<wbr/>modules/molstar/lib/mol-<wbr/>geo/geometry/text/font-<wbr/>atlas&quot;</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a 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