globals.html 66 KB

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  1. <!doctype html>
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  6. <title>@rcsb/rcsb-saguaro-3d</title>
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  25. <a href="index.html" class="title">@rcsb/rcsb-saguaro-3d</a>
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  55. <li>
  56. <a href="globals.html">Globals</a>
  57. </li>
  58. </ul>
  59. <h1>@rcsb/rcsb-saguaro-3d</h1>
  60. </div>
  61. </div>
  62. </header>
  63. <div class="container container-main">
  64. <div class="row">
  65. <div class="col-8 col-content">
  66. <section class="tsd-panel-group tsd-index-group">
  67. <h2>Index</h2>
  68. <section class="tsd-panel tsd-index-panel">
  69. <div class="tsd-index-content">
  70. <section class="tsd-index-section ">
  71. <h3>Enumerations</h3>
  72. <ul class="tsd-index-list">
  73. <li class="tsd-kind-enum"><a href="enums/eventtype.html" class="tsd-kind-icon">Event<wbr>Type</a></li>
  74. <li class="tsd-kind-enum"><a href="enums/loadmethod.html" class="tsd-kind-icon">Load<wbr>Method</a></li>
  75. <li class="tsd-kind-enum"><a href="enums/rcsbfvdomconstants.html" class="tsd-kind-icon">Rcsb<wbr>FvDOMConstants</a></li>
  76. </ul>
  77. </section>
  78. <section class="tsd-index-section ">
  79. <h3>Classes</h3>
  80. <ul class="tsd-index-list">
  81. <li class="tsd-kind-class"><a href="classes/abstractplugin.html" class="tsd-kind-icon">Abstract<wbr>Plugin</a></li>
  82. <li class="tsd-kind-class tsd-has-type-parameter"><a href="classes/abstractview.html" class="tsd-kind-icon">Abstract<wbr>View</a></li>
  83. <li class="tsd-kind-class"><a href="classes/assemblymodelsate.html" class="tsd-kind-icon">Assembly<wbr>Model<wbr>Sate</a></li>
  84. <li class="tsd-kind-class tsd-has-type-parameter"><a href="classes/assemblyview.html" class="tsd-kind-icon">Assembly<wbr>View</a></li>
  85. <li class="tsd-kind-class"><a href="classes/blockselectormanager.html" class="tsd-kind-icon">Block<wbr>Selector<wbr>Manager</a></li>
  86. <li class="tsd-kind-class tsd-has-type-parameter"><a href="classes/chaindisplay.html" class="tsd-kind-icon">Chain<wbr>Display</a></li>
  87. <li class="tsd-kind-class tsd-has-type-parameter"><a href="classes/customview.html" class="tsd-kind-icon">Custom<wbr>View</a></li>
  88. <li class="tsd-kind-class"><a href="classes/molstarplugin.html" class="tsd-kind-icon">Molstar<wbr>Plugin</a></li>
  89. <li class="tsd-kind-class"><a href="classes/rcsbfv3dabstract.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DAbstract</a></li>
  90. <li class="tsd-kind-class"><a href="classes/rcsbfv3dassembly.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DAssembly</a></li>
  91. <li class="tsd-kind-class tsd-has-type-parameter"><a href="classes/rcsbfv3dcomponent.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DComponent</a></li>
  92. <li class="tsd-kind-class"><a href="classes/rcsbfv3dcustom.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DCustom</a></li>
  93. <li class="tsd-kind-class"><a href="classes/rcsbfvcontextmanager.html" class="tsd-kind-icon">Rcsb<wbr>FvContext<wbr>Manager</a></li>
  94. <li class="tsd-kind-class"><a href="classes/rcsbfvselectormanager.html" class="tsd-kind-icon">Rcsb<wbr>FvSelector<wbr>Manager</a></li>
  95. <li class="tsd-kind-class tsd-has-type-parameter"><a href="classes/rcsbfvsequence.html" class="tsd-kind-icon">Rcsb<wbr>FvSequence</a></li>
  96. <li class="tsd-kind-class tsd-has-type-parameter"><a href="classes/rcsbfvstructure.html" class="tsd-kind-icon">Rcsb<wbr>FvStructure</a></li>
  97. </ul>
  98. </section>
  99. <section class="tsd-index-section ">
  100. <h3>Interfaces</h3>
  101. <ul class="tsd-index-list">
  102. <li class="tsd-kind-interface"><a href="interfaces/abstractviewinterface.html" class="tsd-kind-icon">Abstract<wbr>View<wbr>Interface</a></li>
  103. <li class="tsd-kind-interface"><a href="interfaces/assemblymodelstateinterface.html" class="tsd-kind-icon">Assembly<wbr>Model<wbr>State<wbr>Interface</a></li>
  104. <li class="tsd-kind-interface"><a href="interfaces/assemblyviewinterface.html" class="tsd-kind-icon">Assembly<wbr>View<wbr>Interface</a></li>
  105. <li class="tsd-kind-interface"><a href="interfaces/callbackconfig.html" class="tsd-kind-icon">Callback<wbr>Config</a></li>
  106. <li class="tsd-kind-interface"><a href="interfaces/chaindisplayinterface.html" class="tsd-kind-icon">Chain<wbr>Display<wbr>Interface</a></li>
  107. <li class="tsd-kind-interface"><a href="interfaces/chaindisplaystate.html" class="tsd-kind-icon">Chain<wbr>Display<wbr>State</a></li>
  108. <li class="tsd-kind-interface"><a href="interfaces/customviewinterface.html" class="tsd-kind-icon">Custom<wbr>View<wbr>Interface</a></li>
  109. <li class="tsd-kind-interface"><a href="interfaces/featureblockinterface.html" class="tsd-kind-icon">Feature<wbr>Block<wbr>Interface</a></li>
  110. <li class="tsd-kind-interface"><a href="interfaces/featureviewinterface.html" class="tsd-kind-icon">Feature<wbr>View<wbr>Interface</a></li>
  111. <li class="tsd-kind-interface"><a href="interfaces/loadmolstarinterface.html" class="tsd-kind-icon">Load<wbr>Molstar<wbr>Interface</a></li>
  112. <li class="tsd-kind-interface tsd-has-type-parameter"><a href="interfaces/loadparams.html" class="tsd-kind-icon">Load<wbr>Params</a></li>
  113. <li class="tsd-kind-interface"><a href="interfaces/rcsbfv3dabstractinterface.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DAbstract<wbr>Interface</a></li>
  114. <li class="tsd-kind-interface"><a href="interfaces/rcsbfv3dassemblyinterface.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DAssembly<wbr>Interface</a></li>
  115. <li class="tsd-kind-interface"><a href="interfaces/rcsbfv3dcomponentinterface.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DComponent<wbr>Interface</a></li>
  116. <li class="tsd-kind-interface"><a href="interfaces/rcsbfv3dcomponentstate.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DComponent<wbr>State</a></li>
  117. <li class="tsd-kind-interface"><a href="interfaces/rcsbfv3dcssconfig.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DCss<wbr>Config</a></li>
  118. <li class="tsd-kind-interface"><a href="interfaces/rcsbfv3dcustominterface.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DCustom<wbr>Interface</a></li>
  119. <li class="tsd-kind-interface"><a href="interfaces/rcsbfvcontextmanagerinterface.html" class="tsd-kind-icon">Rcsb<wbr>FvContext<wbr>Manager<wbr>Interface</a></li>
  120. <li class="tsd-kind-interface"><a href="interfaces/rcsbfvsequenceinterface.html" class="tsd-kind-icon">Rcsb<wbr>FvSequence<wbr>Interface</a></li>
  121. <li class="tsd-kind-interface"><a href="interfaces/rcsbfvstructureinterface.html" class="tsd-kind-icon">Rcsb<wbr>FvStructure<wbr>Interface</a></li>
  122. <li class="tsd-kind-interface"><a href="interfaces/regionselectioninterface.html" class="tsd-kind-icon">Region<wbr>Selection<wbr>Interface</a></li>
  123. <li class="tsd-kind-interface"><a href="interfaces/saguarochain.html" class="tsd-kind-icon">Saguaro<wbr>Chain</a></li>
  124. <li class="tsd-kind-interface"><a href="interfaces/saguaroplugininterface.html" class="tsd-kind-icon">Saguaro<wbr>Plugin<wbr>Interface</a></li>
  125. <li class="tsd-kind-interface"><a href="interfaces/saguaropluginpublicinterface.html" class="tsd-kind-icon">Saguaro<wbr>Plugin<wbr>Public<wbr>Interface</a></li>
  126. <li class="tsd-kind-interface"><a href="interfaces/saguaroposition.html" class="tsd-kind-icon">Saguaro<wbr>Position</a></li>
  127. <li class="tsd-kind-interface"><a href="interfaces/saguarorange.html" class="tsd-kind-icon">Saguaro<wbr>Range</a></li>
  128. <li class="tsd-kind-interface"><a href="interfaces/saguaroregionlist.html" class="tsd-kind-icon">Saguaro<wbr>Region<wbr>List</a></li>
  129. <li class="tsd-kind-interface"><a href="interfaces/saguaroset.html" class="tsd-kind-icon">Saguaro<wbr>Set</a></li>
  130. <li class="tsd-kind-interface"><a href="interfaces/sequenceviewinterface.html" class="tsd-kind-icon">Sequence<wbr>View<wbr>Interface</a></li>
  131. <li class="tsd-kind-interface"><a href="interfaces/updateconfiginterface.html" class="tsd-kind-icon">Update<wbr>Config<wbr>Interface</a></li>
  132. </ul>
  133. </section>
  134. <section class="tsd-index-section ">
  135. <h3>Type aliases</h3>
  136. <ul class="tsd-index-list">
  137. <li class="tsd-kind-type-alias"><a href="globals.html#chaininfo" class="tsd-kind-icon">Chain<wbr>Info</a></li>
  138. <li class="tsd-kind-type-alias"><a href="globals.html#chaintype" class="tsd-kind-icon">Chain<wbr>Type</a></li>
  139. <li class="tsd-kind-type-alias"><a href="globals.html#customviewstateinterface" class="tsd-kind-icon">Custom<wbr>View<wbr>State<wbr>Interface</a></li>
  140. <li class="tsd-kind-type-alias"><a href="globals.html#operatorinfo" class="tsd-kind-icon">Operator<wbr>Info</a></li>
  141. <li class="tsd-kind-type-alias"><a href="globals.html#rcsbfv3dassemblyadditionalconfig" class="tsd-kind-icon">Rcsb<wbr>Fv3DAssembly<wbr>Additional<wbr>Config</a></li>
  142. <li class="tsd-kind-type-alias"><a href="globals.html#saguaropluginmodelmaptype" class="tsd-kind-icon">Saguaro<wbr>Plugin<wbr>Model<wbr>Map<wbr>Type</a></li>
  143. <li class="tsd-kind-type-alias"><a href="globals.html#structureobject" class="tsd-kind-icon">Structure<wbr>Object</a></li>
  144. </ul>
  145. </section>
  146. <section class="tsd-index-section ">
  147. <h3>Variables</h3>
  148. <ul class="tsd-index-list">
  149. <li class="tsd-kind-variable"><a href="globals.html#rcsbrepresentationpreset" class="tsd-kind-icon">Rcsb<wbr>Representation<wbr>Preset</a></li>
  150. <li class="tsd-kind-variable"><a href="globals.html#rcsbfvwebapppath" class="tsd-kind-icon">rcsb<wbr>FvWeb<wbr>App<wbr>Path</a></li>
  151. </ul>
  152. </section>
  153. <section class="tsd-index-section ">
  154. <h3>Functions</h3>
  155. <ul class="tsd-index-list">
  156. <li class="tsd-kind-function"><a href="globals.html#buildintervals" class="tsd-kind-icon">build<wbr>Intervals</a></li>
  157. <li class="tsd-kind-function"><a href="globals.html#createcomponents" class="tsd-kind-icon">create<wbr>Components</a></li>
  158. <li class="tsd-kind-function"><a href="globals.html#getchainvalues" class="tsd-kind-icon">get<wbr>Chain<wbr>Values</a></li>
  159. <li class="tsd-kind-function"><a href="globals.html#getmodelentityoptions" class="tsd-kind-icon">get<wbr>Model<wbr>Entity<wbr>Options</a></li>
  160. <li class="tsd-kind-function"><a href="globals.html#getoperator" class="tsd-kind-icon">get<wbr>Operator</a></li>
  161. <li class="tsd-kind-function"><a href="globals.html#getstructure" class="tsd-kind-icon">get<wbr>Structure</a></li>
  162. <li class="tsd-kind-function"><a href="globals.html#getstructureoptions" class="tsd-kind-icon">get<wbr>Structure<wbr>Options</a></li>
  163. <li class="tsd-kind-function"><a href="globals.html#getstructurewithmodelid" class="tsd-kind-icon">get<wbr>Structure<wbr>With<wbr>Model<wbr>Id</a></li>
  164. <li class="tsd-kind-function"><a href="globals.html#opkey" class="tsd-kind-icon">op<wbr>Key</a></li>
  165. <li class="tsd-kind-function"><a href="globals.html#processgaps" class="tsd-kind-icon">process<wbr>Gaps</a></li>
  166. <li class="tsd-kind-function"><a href="globals.html#processmultiplegaps" class="tsd-kind-icon">process<wbr>Multiple<wbr>Gaps</a></li>
  167. <li class="tsd-kind-function"><a href="globals.html#selectionfilter" class="tsd-kind-icon">selection<wbr>Filter</a></li>
  168. <li class="tsd-kind-function"><a href="globals.html#selectionfromresidueselection" class="tsd-kind-icon">selection<wbr>From<wbr>Residue<wbr>Selection</a></li>
  169. <li class="tsd-kind-function"><a href="globals.html#splitmodelentityid" class="tsd-kind-icon">split<wbr>Model<wbr>Entity<wbr>Id</a></li>
  170. </ul>
  171. </section>
  172. </div>
  173. </section>
  174. </section>
  175. <section class="tsd-panel-group tsd-member-group ">
  176. <h2>Type aliases</h2>
  177. <section class="tsd-panel tsd-member tsd-kind-type-alias">
  178. <a name="chaininfo" class="tsd-anchor"></a>
  179. <h3>Chain<wbr>Info</h3>
  180. <div class="tsd-signature tsd-kind-icon">Chain<wbr>Info<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-symbol">{ </span>auth<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">; </span>entityId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">; </span>label<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">; </span>operators<span class="tsd-signature-symbol">: </span><a href="globals.html#operatorinfo" class="tsd-signature-type">OperatorInfo</a><span class="tsd-signature-symbol">[]</span><span class="tsd-signature-symbol">; </span>title<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">; </span>type<span class="tsd-signature-symbol">: </span><a href="globals.html#chaintype" class="tsd-signature-type">ChainType</a><span class="tsd-signature-symbol"> }</span></div>
  181. <aside class="tsd-sources">
  182. <ul>
  183. <li>Defined in src/RcsbFvStructure/SaguaroPluginInterface.ts:9</li>
  184. </ul>
  185. </aside>
  186. <div class="tsd-type-declaration">
  187. <h4>Type declaration</h4>
  188. <ul class="tsd-parameters">
  189. <li class="tsd-parameter">
  190. <h5>auth<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span></h5>
  191. </li>
  192. <li class="tsd-parameter">
  193. <h5>entity<wbr>Id<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span></h5>
  194. </li>
  195. <li class="tsd-parameter">
  196. <h5>label<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span></h5>
  197. </li>
  198. <li class="tsd-parameter">
  199. <h5>operators<span class="tsd-signature-symbol">: </span><a href="globals.html#operatorinfo" class="tsd-signature-type">OperatorInfo</a><span class="tsd-signature-symbol">[]</span></h5>
  200. </li>
  201. <li class="tsd-parameter">
  202. <h5>title<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span></h5>
  203. </li>
  204. <li class="tsd-parameter">
  205. <h5>type<span class="tsd-signature-symbol">: </span><a href="globals.html#chaintype" class="tsd-signature-type">ChainType</a></h5>
  206. </li>
  207. </ul>
  208. </div>
  209. </section>
  210. <section class="tsd-panel tsd-member tsd-kind-type-alias">
  211. <a name="chaintype" class="tsd-anchor"></a>
  212. <h3>Chain<wbr>Type</h3>
  213. <div class="tsd-signature tsd-kind-icon">Chain<wbr>Type<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">"polymer"</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">"water"</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">"branched"</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">"non-polymer"</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">"macrolide"</span></div>
  214. <aside class="tsd-sources">
  215. <ul>
  216. <li>Defined in src/RcsbFvStructure/SaguaroPluginInterface.ts:7</li>
  217. </ul>
  218. </aside>
  219. </section>
  220. <section class="tsd-panel tsd-member tsd-kind-type-alias">
  221. <a name="customviewstateinterface" class="tsd-anchor"></a>
  222. <h3>Custom<wbr>View<wbr>State<wbr>Interface</h3>
  223. <div class="tsd-signature tsd-kind-icon">Custom<wbr>View<wbr>State<wbr>Interface<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">Omit</span><span class="tsd-signature-symbol">&lt;</span><a href="interfaces/customviewinterface.html" class="tsd-signature-type">CustomViewInterface</a><span class="tsd-signature-symbol">, </span><span class="tsd-signature-type">"modelChangeCallback"</span><span class="tsd-signature-symbol">&gt;</span></div>
  224. <aside class="tsd-sources">
  225. <ul>
  226. <li>Defined in src/RcsbFvSequence/SequenceViews/CustomView.tsx:17</li>
  227. </ul>
  228. </aside>
  229. </section>
  230. <section class="tsd-panel tsd-member tsd-kind-type-alias">
  231. <a name="operatorinfo" class="tsd-anchor"></a>
  232. <h3>Operator<wbr>Info</h3>
  233. <div class="tsd-signature tsd-kind-icon">Operator<wbr>Info<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-symbol">{ </span>ids<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">[]</span><span class="tsd-signature-symbol">; </span>name<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol"> }</span></div>
  234. <aside class="tsd-sources">
  235. <ul>
  236. <li>Defined in src/RcsbFvStructure/SaguaroPluginInterface.ts:8</li>
  237. </ul>
  238. </aside>
  239. <div class="tsd-type-declaration">
  240. <h4>Type declaration</h4>
  241. <ul class="tsd-parameters">
  242. <li class="tsd-parameter">
  243. <h5>ids<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">[]</span></h5>
  244. </li>
  245. <li class="tsd-parameter">
  246. <h5>name<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span></h5>
  247. </li>
  248. </ul>
  249. </div>
  250. </section>
  251. <section class="tsd-panel tsd-member tsd-kind-type-alias">
  252. <a name="rcsbfv3dassemblyadditionalconfig" class="tsd-anchor"></a>
  253. <h3>Rcsb<wbr>Fv3DAssembly<wbr>Additional<wbr>Config</h3>
  254. <div class="tsd-signature tsd-kind-icon">Rcsb<wbr>Fv3DAssembly<wbr>Additional<wbr>Config<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">RcsbFvAdditionalConfig</span><span class="tsd-signature-symbol"> &amp; </span><span class="tsd-signature-symbol">{ </span>operatorChangeCallback<span class="tsd-signature-symbol">?: </span><span class="tsd-signature-type">undefined</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-symbol">(</span><span class="tsd-signature-symbol">(</span>operatorInfo<span class="tsd-signature-symbol">: </span><a href="globals.html#operatorinfo" class="tsd-signature-type">OperatorInfo</a><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol"> =&gt; </span><span class="tsd-signature-type">void</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol"> }</span></div>
  255. <aside class="tsd-sources">
  256. <ul>
  257. <li>Defined in src/RcsbFv3D/RcsbFv3DAssembly.tsx:8</li>
  258. </ul>
  259. </aside>
  260. </section>
  261. <section class="tsd-panel tsd-member tsd-kind-type-alias">
  262. <a name="saguaropluginmodelmaptype" class="tsd-anchor"></a>
  263. <h3>Saguaro<wbr>Plugin<wbr>Model<wbr>Map<wbr>Type</h3>
  264. <div class="tsd-signature tsd-kind-icon">Saguaro<wbr>Plugin<wbr>Model<wbr>Map<wbr>Type<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">Map</span><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">, </span><span class="tsd-signature-symbol">{ </span>assemblyId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">; </span>chains<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="globals.html#chaininfo" class="tsd-signature-type">ChainInfo</a><span class="tsd-signature-symbol">&gt;</span><span class="tsd-signature-symbol">; </span>entryId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol"> }</span><span class="tsd-signature-symbol">&gt;</span></div>
  265. <aside class="tsd-sources">
  266. <ul>
  267. <li>Defined in src/RcsbFvStructure/SaguaroPluginInterface.ts:10</li>
  268. </ul>
  269. </aside>
  270. </section>
  271. <section class="tsd-panel tsd-member tsd-kind-type-alias">
  272. <a name="structureobject" class="tsd-anchor"></a>
  273. <h3>Structure<wbr>Object</h3>
  274. <div class="tsd-signature tsd-kind-icon">Structure<wbr>Object<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">StateObjectSelector</span><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">Structure</span><span class="tsd-signature-symbol">, </span><span class="tsd-signature-type">StateTransformer</span><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">StateObject</span><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">any</span><span class="tsd-signature-symbol">, </span><span class="tsd-signature-type">StateObject.Type</span><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">any</span><span class="tsd-signature-symbol">&gt;</span><span class="tsd-signature-symbol">&gt;</span><span class="tsd-signature-symbol">, </span><span class="tsd-signature-type">StateObject</span><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">any</span><span class="tsd-signature-symbol">, </span><span class="tsd-signature-type">StateObject.Type</span><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">any</span><span class="tsd-signature-symbol">&gt;</span><span class="tsd-signature-symbol">&gt;</span><span class="tsd-signature-symbol">, </span><span class="tsd-signature-type">any</span><span class="tsd-signature-symbol">&gt;</span><span class="tsd-signature-symbol">&gt;</span></div>
  275. <aside class="tsd-sources">
  276. <ul>
  277. <li>Defined in src/RcsbFvStructure/StructurePlugins/StructureRepresentation.ts:11</li>
  278. </ul>
  279. </aside>
  280. </section>
  281. </section>
  282. <section class="tsd-panel-group tsd-member-group ">
  283. <h2>Variables</h2>
  284. <section class="tsd-panel tsd-member tsd-kind-variable">
  285. <a name="rcsbrepresentationpreset" class="tsd-anchor"></a>
  286. <h3><span class="tsd-flag ts-flagConst">Const</span> Rcsb<wbr>Representation<wbr>Preset</h3>
  287. <div class="tsd-signature tsd-kind-icon">Rcsb<wbr>Representation<wbr>Preset<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">TrajectoryHierarchyPresetProvider</span><span class="tsd-signature-symbol"> = TrajectoryHierarchyPresetProvider({id: &quot;rcsb-saguaro-3d&quot;,display: {name: &#x27;Feature View 3D&#x27;},params: () &#x3D;&gt; ({}),async apply(trajectory, params, plugin) {const builder &#x3D; plugin.builders.structure;const model &#x3D; await builder.createModel(trajectory, {modelIndex: 0});const modelProperties &#x3D; await builder.insertModelProperties(model);const structure: StructureObject &#x3D; await builder.createStructure(modelProperties);const structureProperties: StructureObject &#x3D; await builder.insertStructureProperties(structure);const unitcell: StateObjectSelector | undefined &#x3D; await builder.tryCreateUnitcell(modelProperties, undefined, { isHidden: true });const representation: StructureRepresentationPresetProvider.Result | undefined &#x3D; await plugin.builders.structure.representation.applyPreset(structureProperties, PresetStructureRepresentations.auto);components:for (const c of plugin.managers.structure.hierarchy.currentComponentGroups) {for (const comp of c) {if(comp.cell.obj?.label &#x3D;&#x3D;&#x3D; &quot;Water&quot;) {plugin.managers.structure.component.toggleVisibility(c);break components;}}}components:for (const c of plugin.managers.structure.hierarchy.currentComponentGroups) {for (const comp of c) {if(comp.cell.obj?.label &#x3D;&#x3D;&#x3D; &quot;Polymer&quot;) {plugin.managers.structure.component.updateRepresentationsTheme([comp], { color: &#x27;chain-id&#x27; });break components;}}}return {model,modelProperties,unitcell,structure,structureProperties,representation};}})</span></div>
  288. <aside class="tsd-sources">
  289. <ul>
  290. <li>Defined in src/RcsbFvStructure/StructurePlugins/StructureRepresentation.ts:13</li>
  291. </ul>
  292. </aside>
  293. </section>
  294. <section class="tsd-panel tsd-member tsd-kind-variable">
  295. <a name="rcsbfvwebapppath" class="tsd-anchor"></a>
  296. <h3><span class="tsd-flag ts-flagConst">Const</span> rcsb<wbr>FvWeb<wbr>App<wbr>Path</h3>
  297. <div class="tsd-signature tsd-kind-icon">rcsb<wbr>FvWeb<wbr>App<wbr>Path<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">string</span><span class="tsd-signature-symbol"> = path.resolve(path.join(__dirname, &#x27;..&#x27;, &#x27;dist&#x27;))</span></div>
  298. <aside class="tsd-sources">
  299. <ul>
  300. <li>Defined in src/config.ts:3</li>
  301. </ul>
  302. </aside>
  303. </section>
  304. </section>
  305. <section class="tsd-panel-group tsd-member-group ">
  306. <h2>Functions</h2>
  307. <section class="tsd-panel tsd-member tsd-kind-function">
  308. <a name="buildintervals" class="tsd-anchor"></a>
  309. <h3>build<wbr>Intervals</h3>
  310. <ul class="tsd-signatures tsd-kind-function">
  311. <li class="tsd-signature tsd-kind-icon">build<wbr>Intervals<span class="tsd-signature-symbol">(</span>ids<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Set</span><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">&gt;</span>, source<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">"structure"</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">"sequence"</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="interfaces/regionselectioninterface.html" class="tsd-signature-type">RegionSelectionInterface</a><span class="tsd-signature-symbol">&gt;</span></li>
  312. </ul>
  313. <ul class="tsd-descriptions">
  314. <li class="tsd-description">
  315. <aside class="tsd-sources">
  316. <ul>
  317. <li>Defined in src/RcsbFvSelection/RcsbFvSelectorManager.ts:133</li>
  318. </ul>
  319. </aside>
  320. <h4 class="tsd-parameters-title">Parameters</h4>
  321. <ul class="tsd-parameters">
  322. <li>
  323. <h5>ids: <span class="tsd-signature-type">Set</span><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">&gt;</span></h5>
  324. </li>
  325. <li>
  326. <h5>source: <span class="tsd-signature-type">"structure"</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">"sequence"</span></h5>
  327. </li>
  328. </ul>
  329. <h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="interfaces/regionselectioninterface.html" class="tsd-signature-type">RegionSelectionInterface</a><span class="tsd-signature-symbol">&gt;</span></h4>
  330. </li>
  331. </ul>
  332. </section>
  333. <section class="tsd-panel tsd-member tsd-kind-function">
  334. <a name="createcomponents" class="tsd-anchor"></a>
  335. <h3>create<wbr>Components</h3>
  336. <ul class="tsd-signatures tsd-kind-function">
  337. <li class="tsd-signature tsd-kind-icon">create<wbr>Components<span class="tsd-signature-symbol">(</span>plugin<span class="tsd-signature-symbol">: </span><a href="interfaces/saguaroplugininterface.html" class="tsd-signature-type">SaguaroPluginInterface</a>, modelMap<span class="tsd-signature-symbol">: </span><a href="globals.html#saguaropluginmodelmaptype" class="tsd-signature-type">SaguaroPluginModelMapType</a><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Promise</span><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">void</span><span class="tsd-signature-symbol">&gt;</span></li>
  338. </ul>
  339. <ul class="tsd-descriptions">
  340. <li class="tsd-description">
  341. <aside class="tsd-sources">
  342. <ul>
  343. <li>Defined in src/RcsbFvSequence/SequenceViews/AssemblyView/AssemblyView.tsx:457</li>
  344. </ul>
  345. </aside>
  346. <h4 class="tsd-parameters-title">Parameters</h4>
  347. <ul class="tsd-parameters">
  348. <li>
  349. <h5>plugin: <a href="interfaces/saguaroplugininterface.html" class="tsd-signature-type">SaguaroPluginInterface</a></h5>
  350. </li>
  351. <li>
  352. <h5>modelMap: <a href="globals.html#saguaropluginmodelmaptype" class="tsd-signature-type">SaguaroPluginModelMapType</a></h5>
  353. </li>
  354. </ul>
  355. <h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">Promise</span><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">void</span><span class="tsd-signature-symbol">&gt;</span></h4>
  356. </li>
  357. </ul>
  358. </section>
  359. <section class="tsd-panel tsd-member tsd-kind-function">
  360. <a name="getchainvalues" class="tsd-anchor"></a>
  361. <h3>get<wbr>Chain<wbr>Values</h3>
  362. <ul class="tsd-signatures tsd-kind-function">
  363. <li class="tsd-signature tsd-kind-icon">get<wbr>Chain<wbr>Values<span class="tsd-signature-symbol">(</span>structure<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Structure</span>, modelEntityId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-symbol">[</span><span class="tsd-signature-symbol">]</span></li>
  364. </ul>
  365. <ul class="tsd-descriptions">
  366. <li class="tsd-description">
  367. <aside class="tsd-sources">
  368. <ul>
  369. <li>Defined in src/RcsbFvStructure/StructurePlugins/MolstarPlugin.ts:529</li>
  370. </ul>
  371. </aside>
  372. <h4 class="tsd-parameters-title">Parameters</h4>
  373. <ul class="tsd-parameters">
  374. <li>
  375. <h5>structure: <span class="tsd-signature-type">Structure</span></h5>
  376. </li>
  377. <li>
  378. <h5>modelEntityId: <span class="tsd-signature-type">string</span></h5>
  379. </li>
  380. </ul>
  381. <h4 class="tsd-returns-title">Returns <span class="tsd-signature-symbol">[</span><span class="tsd-signature-symbol">]</span></h4>
  382. </li>
  383. </ul>
  384. </section>
  385. <section class="tsd-panel tsd-member tsd-kind-function">
  386. <a name="getmodelentityoptions" class="tsd-anchor"></a>
  387. <h3>get<wbr>Model<wbr>Entity<wbr>Options</h3>
  388. <ul class="tsd-signatures tsd-kind-function">
  389. <li class="tsd-signature tsd-kind-icon">get<wbr>Model<wbr>Entity<wbr>Options<span class="tsd-signature-symbol">(</span>structure<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Structure</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-symbol">[</span><span class="tsd-signature-symbol">]</span><span class="tsd-signature-symbol">[]</span></li>
  390. </ul>
  391. <ul class="tsd-descriptions">
  392. <li class="tsd-description">
  393. <aside class="tsd-sources">
  394. <ul>
  395. <li>Defined in src/RcsbFvStructure/StructurePlugins/MolstarPlugin.ts:566</li>
  396. </ul>
  397. </aside>
  398. <h4 class="tsd-parameters-title">Parameters</h4>
  399. <ul class="tsd-parameters">
  400. <li>
  401. <h5>structure: <span class="tsd-signature-type">Structure</span></h5>
  402. </li>
  403. </ul>
  404. <h4 class="tsd-returns-title">Returns <span class="tsd-signature-symbol">[</span><span class="tsd-signature-symbol">]</span><span class="tsd-signature-symbol">[]</span></h4>
  405. </li>
  406. </ul>
  407. </section>
  408. <section class="tsd-panel tsd-member tsd-kind-function">
  409. <a name="getoperator" class="tsd-anchor"></a>
  410. <h3>get<wbr>Operator</h3>
  411. <ul class="tsd-signatures tsd-kind-function">
  412. <li class="tsd-signature tsd-kind-icon">get<wbr>Operator<span class="tsd-signature-symbol">(</span>entryInfo<span class="tsd-signature-symbol">: </span><span class="tsd-signature-symbol">{ </span>assemblyId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">; </span>chains<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="globals.html#chaininfo" class="tsd-signature-type">ChainInfo</a><span class="tsd-signature-symbol">&gt;</span><span class="tsd-signature-symbol">; </span>entryId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol"> }</span>, defaultAuthId<span class="tsd-signature-symbol">?: </span><span class="tsd-signature-type">undefined</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">string</span>, defaultOperatorName<span class="tsd-signature-symbol">?: </span><span class="tsd-signature-type">undefined</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><a href="globals.html#operatorinfo" class="tsd-signature-type">OperatorInfo</a><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">undefined</span></li>
  413. </ul>
  414. <ul class="tsd-descriptions">
  415. <li class="tsd-description">
  416. <aside class="tsd-sources">
  417. <ul>
  418. <li>Defined in src/RcsbFvSequence/SequenceViews/AssemblyView/AssemblyView.tsx:478</li>
  419. </ul>
  420. </aside>
  421. <h4 class="tsd-parameters-title">Parameters</h4>
  422. <ul class="tsd-parameters">
  423. <li>
  424. <h5>entryInfo: <span class="tsd-signature-symbol">{ </span>assemblyId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">; </span>chains<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="globals.html#chaininfo" class="tsd-signature-type">ChainInfo</a><span class="tsd-signature-symbol">&gt;</span><span class="tsd-signature-symbol">; </span>entryId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol"> }</span></h5>
  425. <ul class="tsd-parameters">
  426. <li class="tsd-parameter">
  427. <h5>assembly<wbr>Id<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span></h5>
  428. </li>
  429. <li class="tsd-parameter">
  430. <h5>chains<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="globals.html#chaininfo" class="tsd-signature-type">ChainInfo</a><span class="tsd-signature-symbol">&gt;</span></h5>
  431. </li>
  432. <li class="tsd-parameter">
  433. <h5>entry<wbr>Id<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span></h5>
  434. </li>
  435. </ul>
  436. </li>
  437. <li>
  438. <h5><span class="tsd-flag ts-flagOptional">Optional</span> defaultAuthId: <span class="tsd-signature-type">undefined</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">string</span></h5>
  439. </li>
  440. <li>
  441. <h5><span class="tsd-flag ts-flagOptional">Optional</span> defaultOperatorName: <span class="tsd-signature-type">undefined</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">string</span></h5>
  442. </li>
  443. </ul>
  444. <h4 class="tsd-returns-title">Returns <a href="globals.html#operatorinfo" class="tsd-signature-type">OperatorInfo</a><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">undefined</span></h4>
  445. </li>
  446. </ul>
  447. </section>
  448. <section class="tsd-panel tsd-member tsd-kind-function">
  449. <a name="getstructure" class="tsd-anchor"></a>
  450. <h3>get<wbr>Structure</h3>
  451. <ul class="tsd-signatures tsd-kind-function">
  452. <li class="tsd-signature tsd-kind-icon">get<wbr>Structure<span class="tsd-signature-symbol">(</span>ref<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span>, state<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">State</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Structure</span></li>
  453. </ul>
  454. <ul class="tsd-descriptions">
  455. <li class="tsd-description">
  456. <aside class="tsd-sources">
  457. <ul>
  458. <li>Defined in src/RcsbFvStructure/StructurePlugins/MolstarPlugin.ts:560</li>
  459. </ul>
  460. </aside>
  461. <h4 class="tsd-parameters-title">Parameters</h4>
  462. <ul class="tsd-parameters">
  463. <li>
  464. <h5>ref: <span class="tsd-signature-type">string</span></h5>
  465. </li>
  466. <li>
  467. <h5>state: <span class="tsd-signature-type">State</span></h5>
  468. </li>
  469. </ul>
  470. <h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">Structure</span></h4>
  471. </li>
  472. </ul>
  473. </section>
  474. <section class="tsd-panel tsd-member tsd-kind-function">
  475. <a name="getstructureoptions" class="tsd-anchor"></a>
  476. <h3>get<wbr>Structure<wbr>Options</h3>
  477. <ul class="tsd-signatures tsd-kind-function">
  478. <li class="tsd-signature tsd-kind-icon">get<wbr>Structure<wbr>Options<span class="tsd-signature-symbol">(</span>plugin<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">PluginContext</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-symbol">[</span><span class="tsd-signature-symbol">]</span><span class="tsd-signature-symbol">[]</span></li>
  479. </ul>
  480. <ul class="tsd-descriptions">
  481. <li class="tsd-description">
  482. <aside class="tsd-sources">
  483. <ul>
  484. <li>Defined in src/RcsbFvStructure/StructurePlugins/MolstarPlugin.ts:521</li>
  485. </ul>
  486. </aside>
  487. <h4 class="tsd-parameters-title">Parameters</h4>
  488. <ul class="tsd-parameters">
  489. <li>
  490. <h5>plugin: <span class="tsd-signature-type">PluginContext</span></h5>
  491. </li>
  492. </ul>
  493. <h4 class="tsd-returns-title">Returns <span class="tsd-signature-symbol">[</span><span class="tsd-signature-symbol">]</span><span class="tsd-signature-symbol">[]</span></h4>
  494. </li>
  495. </ul>
  496. </section>
  497. <section class="tsd-panel tsd-member tsd-kind-function">
  498. <a name="getstructurewithmodelid" class="tsd-anchor"></a>
  499. <h3>get<wbr>Structure<wbr>With<wbr>Model<wbr>Id</h3>
  500. <ul class="tsd-signatures tsd-kind-function">
  501. <li class="tsd-signature tsd-kind-icon">get<wbr>Structure<wbr>With<wbr>Model<wbr>Id<span class="tsd-signature-symbol">(</span>structures<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">StructureRef</span><span class="tsd-signature-symbol">[]</span>, modelId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Structure</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">undefined</span></li>
  502. </ul>
  503. <ul class="tsd-descriptions">
  504. <li class="tsd-description">
  505. <aside class="tsd-sources">
  506. <ul>
  507. <li>Defined in src/RcsbFvStructure/StructurePlugins/MolstarPlugin.ts:549</li>
  508. </ul>
  509. </aside>
  510. <h4 class="tsd-parameters-title">Parameters</h4>
  511. <ul class="tsd-parameters">
  512. <li>
  513. <h5>structures: <span class="tsd-signature-type">StructureRef</span><span class="tsd-signature-symbol">[]</span></h5>
  514. </li>
  515. <li>
  516. <h5>modelId: <span class="tsd-signature-type">string</span></h5>
  517. </li>
  518. </ul>
  519. <h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">Structure</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">undefined</span></h4>
  520. </li>
  521. </ul>
  522. </section>
  523. <section class="tsd-panel tsd-member tsd-kind-function">
  524. <a name="opkey" class="tsd-anchor"></a>
  525. <h3>op<wbr>Key</h3>
  526. <ul class="tsd-signatures tsd-kind-function">
  527. <li class="tsd-signature tsd-kind-icon">op<wbr>Key<span class="tsd-signature-symbol">(</span>l<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Location</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><a href="globals.html#operatorinfo" class="tsd-signature-type">OperatorInfo</a></li>
  528. </ul>
  529. <ul class="tsd-descriptions">
  530. <li class="tsd-description">
  531. <aside class="tsd-sources">
  532. <ul>
  533. <li>Defined in src/RcsbFvStructure/StructurePlugins/MolstarPlugin.ts:597</li>
  534. </ul>
  535. </aside>
  536. <h4 class="tsd-parameters-title">Parameters</h4>
  537. <ul class="tsd-parameters">
  538. <li>
  539. <h5>l: <span class="tsd-signature-type">Location</span></h5>
  540. </li>
  541. </ul>
  542. <h4 class="tsd-returns-title">Returns <a href="globals.html#operatorinfo" class="tsd-signature-type">OperatorInfo</a></h4>
  543. </li>
  544. </ul>
  545. </section>
  546. <section class="tsd-panel tsd-member tsd-kind-function">
  547. <a name="processgaps" class="tsd-anchor"></a>
  548. <h3>process<wbr>Gaps</h3>
  549. <ul class="tsd-signatures tsd-kind-function">
  550. <li class="tsd-signature tsd-kind-icon">process<wbr>Gaps<span class="tsd-signature-symbol">(</span>modelId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span>, labelAsymId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span>, e<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">RcsbFvTrackDataElementInterface</span>, operatorName<span class="tsd-signature-symbol">?: </span><span class="tsd-signature-type">undefined</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="interfaces/saguarorange.html" class="tsd-signature-type">SaguaroRange</a><span class="tsd-signature-symbol">&gt;</span></li>
  551. </ul>
  552. <ul class="tsd-descriptions">
  553. <li class="tsd-description">
  554. <aside class="tsd-sources">
  555. <ul>
  556. <li>Defined in src/RcsbFvSequence/SequenceViews/AssemblyView/AssemblyView.tsx:426</li>
  557. </ul>
  558. </aside>
  559. <h4 class="tsd-parameters-title">Parameters</h4>
  560. <ul class="tsd-parameters">
  561. <li>
  562. <h5>modelId: <span class="tsd-signature-type">string</span></h5>
  563. </li>
  564. <li>
  565. <h5>labelAsymId: <span class="tsd-signature-type">string</span></h5>
  566. </li>
  567. <li>
  568. <h5>e: <span class="tsd-signature-type">RcsbFvTrackDataElementInterface</span></h5>
  569. </li>
  570. <li>
  571. <h5><span class="tsd-flag ts-flagOptional">Optional</span> operatorName: <span class="tsd-signature-type">undefined</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">string</span></h5>
  572. </li>
  573. </ul>
  574. <h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="interfaces/saguarorange.html" class="tsd-signature-type">SaguaroRange</a><span class="tsd-signature-symbol">&gt;</span></h4>
  575. </li>
  576. </ul>
  577. </section>
  578. <section class="tsd-panel tsd-member tsd-kind-function">
  579. <a name="processmultiplegaps" class="tsd-anchor"></a>
  580. <h3>process<wbr>Multiple<wbr>Gaps</h3>
  581. <ul class="tsd-signatures tsd-kind-function">
  582. <li class="tsd-signature tsd-kind-icon">process<wbr>Multiple<wbr>Gaps<span class="tsd-signature-symbol">(</span>modelId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span>, labelAsymId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span>, list<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">RcsbFvTrackDataElementInterface</span><span class="tsd-signature-symbol">&gt;</span>, operatorName<span class="tsd-signature-symbol">?: </span><span class="tsd-signature-type">undefined</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="interfaces/saguarorange.html" class="tsd-signature-type">SaguaroRange</a><span class="tsd-signature-symbol">&gt;</span></li>
  583. </ul>
  584. <ul class="tsd-descriptions">
  585. <li class="tsd-description">
  586. <aside class="tsd-sources">
  587. <ul>
  588. <li>Defined in src/RcsbFvSequence/SequenceViews/AssemblyView/AssemblyView.tsx:449</li>
  589. </ul>
  590. </aside>
  591. <h4 class="tsd-parameters-title">Parameters</h4>
  592. <ul class="tsd-parameters">
  593. <li>
  594. <h5>modelId: <span class="tsd-signature-type">string</span></h5>
  595. </li>
  596. <li>
  597. <h5>labelAsymId: <span class="tsd-signature-type">string</span></h5>
  598. </li>
  599. <li>
  600. <h5>list: <span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">RcsbFvTrackDataElementInterface</span><span class="tsd-signature-symbol">&gt;</span></h5>
  601. </li>
  602. <li>
  603. <h5><span class="tsd-flag ts-flagOptional">Optional</span> operatorName: <span class="tsd-signature-type">undefined</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">string</span></h5>
  604. </li>
  605. </ul>
  606. <h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="interfaces/saguarorange.html" class="tsd-signature-type">SaguaroRange</a><span class="tsd-signature-symbol">&gt;</span></h4>
  607. </li>
  608. </ul>
  609. </section>
  610. <section class="tsd-panel tsd-member tsd-kind-function">
  611. <a name="selectionfilter" class="tsd-anchor"></a>
  612. <h3>selection<wbr>Filter</h3>
  613. <ul class="tsd-signatures tsd-kind-function">
  614. <li class="tsd-signature tsd-kind-icon">selection<wbr>Filter<span class="tsd-signature-symbol">(</span>r<span class="tsd-signature-symbol">: </span><a href="interfaces/saguaroregionlist.html" class="tsd-signature-type">SaguaroRegionList</a>, selection<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Partial</span><span class="tsd-signature-symbol">&lt;</span><a href="interfaces/saguarochain.html" class="tsd-signature-type">SaguaroChain</a><span class="tsd-signature-symbol">&gt;</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">boolean</span></li>
  615. </ul>
  616. <ul class="tsd-descriptions">
  617. <li class="tsd-description">
  618. <aside class="tsd-sources">
  619. <ul>
  620. <li>Defined in src/RcsbFvSelection/RcsbFvSelectorManager.ts:151</li>
  621. </ul>
  622. </aside>
  623. <h4 class="tsd-parameters-title">Parameters</h4>
  624. <ul class="tsd-parameters">
  625. <li>
  626. <h5>r: <a href="interfaces/saguaroregionlist.html" class="tsd-signature-type">SaguaroRegionList</a></h5>
  627. </li>
  628. <li>
  629. <h5>selection: <span class="tsd-signature-type">Partial</span><span class="tsd-signature-symbol">&lt;</span><a href="interfaces/saguarochain.html" class="tsd-signature-type">SaguaroChain</a><span class="tsd-signature-symbol">&gt;</span></h5>
  630. </li>
  631. </ul>
  632. <h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">boolean</span></h4>
  633. </li>
  634. </ul>
  635. </section>
  636. <section class="tsd-panel tsd-member tsd-kind-function">
  637. <a name="selectionfromresidueselection" class="tsd-anchor"></a>
  638. <h3>selection<wbr>From<wbr>Residue<wbr>Selection</h3>
  639. <ul class="tsd-signatures tsd-kind-function">
  640. <li class="tsd-signature tsd-kind-icon">selection<wbr>From<wbr>Residue<wbr>Selection<span class="tsd-signature-symbol">(</span>res<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="interfaces/saguaroset.html" class="tsd-signature-type">SaguaroSet</a><span class="tsd-signature-symbol">&gt;</span>, mode<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">"select"</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">"hover"</span>, source<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">"structure"</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">"sequence"</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="interfaces/saguaroregionlist.html" class="tsd-signature-type">SaguaroRegionList</a><span class="tsd-signature-symbol">&gt;</span></li>
  641. </ul>
  642. <ul class="tsd-descriptions">
  643. <li class="tsd-description">
  644. <aside class="tsd-sources">
  645. <ul>
  646. <li>Defined in src/RcsbFvSelection/RcsbFvSelectorManager.ts:101</li>
  647. </ul>
  648. </aside>
  649. <h4 class="tsd-parameters-title">Parameters</h4>
  650. <ul class="tsd-parameters">
  651. <li>
  652. <h5>res: <span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="interfaces/saguaroset.html" class="tsd-signature-type">SaguaroSet</a><span class="tsd-signature-symbol">&gt;</span></h5>
  653. </li>
  654. <li>
  655. <h5>mode: <span class="tsd-signature-type">"select"</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">"hover"</span></h5>
  656. </li>
  657. <li>
  658. <h5>source: <span class="tsd-signature-type">"structure"</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">"sequence"</span></h5>
  659. </li>
  660. </ul>
  661. <h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">Array</span><span class="tsd-signature-symbol">&lt;</span><a href="interfaces/saguaroregionlist.html" class="tsd-signature-type">SaguaroRegionList</a><span class="tsd-signature-symbol">&gt;</span></h4>
  662. </li>
  663. </ul>
  664. </section>
  665. <section class="tsd-panel tsd-member tsd-kind-function">
  666. <a name="splitmodelentityid" class="tsd-anchor"></a>
  667. <h3>split<wbr>Model<wbr>Entity<wbr>Id</h3>
  668. <ul class="tsd-signatures tsd-kind-function">
  669. <li class="tsd-signature tsd-kind-icon">split<wbr>Model<wbr>Entity<wbr>Id<span class="tsd-signature-symbol">(</span>modelEntityId<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-symbol">(</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">[]</span></li>
  670. </ul>
  671. <ul class="tsd-descriptions">
  672. <li class="tsd-description">
  673. <aside class="tsd-sources">
  674. <ul>
  675. <li>Defined in src/RcsbFvStructure/StructurePlugins/MolstarPlugin.ts:592</li>
  676. </ul>
  677. </aside>
  678. <h4 class="tsd-parameters-title">Parameters</h4>
  679. <ul class="tsd-parameters">
  680. <li>
  681. <h5>modelEntityId: <span class="tsd-signature-type">string</span></h5>
  682. </li>
  683. </ul>
  684. <h4 class="tsd-returns-title">Returns <span class="tsd-signature-symbol">(</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol"> | </span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">[]</span></h4>
  685. </li>
  686. </ul>
  687. </section>
  688. </section>
  689. </div>
  690. <div class="col-4 col-menu menu-sticky-wrap menu-highlight">
  691. <nav class="tsd-navigation primary">
  692. <ul>
  693. <li class="globals current ">
  694. <a href="globals.html"><em>Globals</em></a>
  695. </li>
  696. </ul>
  697. </nav>
  698. <nav class="tsd-navigation secondary menu-sticky">
  699. <ul class="before-current">
  700. <li class=" tsd-kind-enum">
  701. <a href="enums/eventtype.html" class="tsd-kind-icon">Event<wbr>Type</a>
  702. </li>
  703. <li class=" tsd-kind-enum">
  704. <a href="enums/loadmethod.html" class="tsd-kind-icon">Load<wbr>Method</a>
  705. </li>
  706. <li class=" tsd-kind-enum">
  707. <a href="enums/rcsbfvdomconstants.html" class="tsd-kind-icon">Rcsb<wbr>FvDOMConstants</a>
  708. </li>
  709. <li class=" tsd-kind-class">
  710. <a href="classes/abstractplugin.html" class="tsd-kind-icon">Abstract<wbr>Plugin</a>
  711. </li>
  712. <li class=" tsd-kind-class tsd-has-type-parameter">
  713. <a href="classes/abstractview.html" class="tsd-kind-icon">Abstract<wbr>View</a>
  714. </li>
  715. <li class=" tsd-kind-class">
  716. <a href="classes/assemblymodelsate.html" class="tsd-kind-icon">Assembly<wbr>Model<wbr>Sate</a>
  717. </li>
  718. <li class=" tsd-kind-class tsd-has-type-parameter">
  719. <a href="classes/assemblyview.html" class="tsd-kind-icon">Assembly<wbr>View</a>
  720. </li>
  721. <li class=" tsd-kind-class">
  722. <a href="classes/blockselectormanager.html" class="tsd-kind-icon">Block<wbr>Selector<wbr>Manager</a>
  723. </li>
  724. <li class=" tsd-kind-class tsd-has-type-parameter">
  725. <a href="classes/chaindisplay.html" class="tsd-kind-icon">Chain<wbr>Display</a>
  726. </li>
  727. <li class=" tsd-kind-class tsd-has-type-parameter">
  728. <a href="classes/customview.html" class="tsd-kind-icon">Custom<wbr>View</a>
  729. </li>
  730. <li class=" tsd-kind-class">
  731. <a href="classes/molstarplugin.html" class="tsd-kind-icon">Molstar<wbr>Plugin</a>
  732. </li>
  733. <li class=" tsd-kind-class">
  734. <a href="classes/rcsbfv3dabstract.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DAbstract</a>
  735. </li>
  736. <li class=" tsd-kind-class">
  737. <a href="classes/rcsbfv3dassembly.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DAssembly</a>
  738. </li>
  739. <li class=" tsd-kind-class tsd-has-type-parameter">
  740. <a href="classes/rcsbfv3dcomponent.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DComponent</a>
  741. </li>
  742. <li class=" tsd-kind-class">
  743. <a href="classes/rcsbfv3dcustom.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DCustom</a>
  744. </li>
  745. <li class=" tsd-kind-class">
  746. <a href="classes/rcsbfvcontextmanager.html" class="tsd-kind-icon">Rcsb<wbr>FvContext<wbr>Manager</a>
  747. </li>
  748. <li class=" tsd-kind-class">
  749. <a href="classes/rcsbfvselectormanager.html" class="tsd-kind-icon">Rcsb<wbr>FvSelector<wbr>Manager</a>
  750. </li>
  751. <li class=" tsd-kind-class tsd-has-type-parameter">
  752. <a href="classes/rcsbfvsequence.html" class="tsd-kind-icon">Rcsb<wbr>FvSequence</a>
  753. </li>
  754. <li class=" tsd-kind-class tsd-has-type-parameter">
  755. <a href="classes/rcsbfvstructure.html" class="tsd-kind-icon">Rcsb<wbr>FvStructure</a>
  756. </li>
  757. <li class=" tsd-kind-interface">
  758. <a href="interfaces/abstractviewinterface.html" class="tsd-kind-icon">Abstract<wbr>View<wbr>Interface</a>
  759. </li>
  760. <li class=" tsd-kind-interface">
  761. <a href="interfaces/assemblymodelstateinterface.html" class="tsd-kind-icon">Assembly<wbr>Model<wbr>State<wbr>Interface</a>
  762. </li>
  763. <li class=" tsd-kind-interface">
  764. <a href="interfaces/assemblyviewinterface.html" class="tsd-kind-icon">Assembly<wbr>View<wbr>Interface</a>
  765. </li>
  766. <li class=" tsd-kind-interface">
  767. <a href="interfaces/callbackconfig.html" class="tsd-kind-icon">Callback<wbr>Config</a>
  768. </li>
  769. <li class=" tsd-kind-interface">
  770. <a href="interfaces/chaindisplayinterface.html" class="tsd-kind-icon">Chain<wbr>Display<wbr>Interface</a>
  771. </li>
  772. <li class=" tsd-kind-interface">
  773. <a href="interfaces/chaindisplaystate.html" class="tsd-kind-icon">Chain<wbr>Display<wbr>State</a>
  774. </li>
  775. <li class=" tsd-kind-interface">
  776. <a href="interfaces/customviewinterface.html" class="tsd-kind-icon">Custom<wbr>View<wbr>Interface</a>
  777. </li>
  778. <li class=" tsd-kind-interface">
  779. <a href="interfaces/featureblockinterface.html" class="tsd-kind-icon">Feature<wbr>Block<wbr>Interface</a>
  780. </li>
  781. <li class=" tsd-kind-interface">
  782. <a href="interfaces/featureviewinterface.html" class="tsd-kind-icon">Feature<wbr>View<wbr>Interface</a>
  783. </li>
  784. <li class=" tsd-kind-interface">
  785. <a href="interfaces/loadmolstarinterface.html" class="tsd-kind-icon">Load<wbr>Molstar<wbr>Interface</a>
  786. </li>
  787. <li class=" tsd-kind-interface tsd-has-type-parameter">
  788. <a href="interfaces/loadparams.html" class="tsd-kind-icon">Load<wbr>Params</a>
  789. </li>
  790. <li class=" tsd-kind-interface">
  791. <a href="interfaces/rcsbfv3dabstractinterface.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DAbstract<wbr>Interface</a>
  792. </li>
  793. <li class=" tsd-kind-interface">
  794. <a href="interfaces/rcsbfv3dassemblyinterface.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DAssembly<wbr>Interface</a>
  795. </li>
  796. <li class=" tsd-kind-interface">
  797. <a href="interfaces/rcsbfv3dcomponentinterface.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DComponent<wbr>Interface</a>
  798. </li>
  799. <li class=" tsd-kind-interface">
  800. <a href="interfaces/rcsbfv3dcomponentstate.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DComponent<wbr>State</a>
  801. </li>
  802. <li class=" tsd-kind-interface">
  803. <a href="interfaces/rcsbfv3dcssconfig.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DCss<wbr>Config</a>
  804. </li>
  805. <li class=" tsd-kind-interface">
  806. <a href="interfaces/rcsbfv3dcustominterface.html" class="tsd-kind-icon">Rcsb<wbr>Fv3DCustom<wbr>Interface</a>
  807. </li>
  808. <li class=" tsd-kind-interface">
  809. <a href="interfaces/rcsbfvcontextmanagerinterface.html" class="tsd-kind-icon">Rcsb<wbr>FvContext<wbr>Manager<wbr>Interface</a>
  810. </li>
  811. <li class=" tsd-kind-interface">
  812. <a href="interfaces/rcsbfvsequenceinterface.html" class="tsd-kind-icon">Rcsb<wbr>FvSequence<wbr>Interface</a>
  813. </li>
  814. <li class=" tsd-kind-interface">
  815. <a href="interfaces/rcsbfvstructureinterface.html" class="tsd-kind-icon">Rcsb<wbr>FvStructure<wbr>Interface</a>
  816. </li>
  817. <li class=" tsd-kind-interface">
  818. <a href="interfaces/regionselectioninterface.html" class="tsd-kind-icon">Region<wbr>Selection<wbr>Interface</a>
  819. </li>
  820. <li class=" tsd-kind-interface">
  821. <a href="interfaces/saguarochain.html" class="tsd-kind-icon">Saguaro<wbr>Chain</a>
  822. </li>
  823. <li class=" tsd-kind-interface">
  824. <a href="interfaces/saguaroplugininterface.html" class="tsd-kind-icon">Saguaro<wbr>Plugin<wbr>Interface</a>
  825. </li>
  826. <li class=" tsd-kind-interface">
  827. <a href="interfaces/saguaropluginpublicinterface.html" class="tsd-kind-icon">Saguaro<wbr>Plugin<wbr>Public<wbr>Interface</a>
  828. </li>
  829. <li class=" tsd-kind-interface">
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