Semantic Versioning
- Update links to new Mol* organization
- Remove
PLDDTConfidenceScore in favor of impl from parent project
- Show downloaded structures with default/auto representation
- Hide unusable Animate State Snapshots option
- fix typo in pLDDT behavior name
loadStructureFromData() is not async anymore- Replaced
getPlugin() by plugin() getter
- Signature changes to
setFocus(), select(), clearSelection(), and createComponent()
- Effectively the overloaded methods were replaced by ones that use
Target objects to reference residues/ranges
- Merged
Range into Target
- 'CIF' fields are now represented as camelCase (
label_asym_id to labelAsymId)
- Renamed
label_seq_id to labelSeqRange (if referring to a range and not a single residue)
ColorProp and PropsetProps now use Target
positions and selection props renamed to targets of type Target[]
- Changed loading methods signature
- Added optional configuration parameter
config?: {props?: PresetProps; matrix?: Mat4; reprProvider?: TrajectoryHierarchyPresetProvider, params?: P}
- The loading configuration includes an optional trajectory preset provider
TrajectoryHierarchyPresetProvider
- Remove
alignMotif methods (& pecos-integration) as the strucmotif service now reports RMSD and transformations for all hits
- Support multiple chains in pLDDT confidence coloring
- Dedicated UI for quality assessment & validation reports
- Try to fix packing issues
- Mol* 2.3.7 (more WebGL fixes)
- Mol* 2.3.5 and other dependencies (iOS WebGL fixes)
- Rewire index parameter of symmetry preset
- removed implicit 'chain-mode', must be explicitly requested by setting 'extendToChain' to true as part of the part
- More robust 'chain-mode' check in feature preset
- Don't expand MP4 export controls as part of the symmetry preset
- Integrate PDBe/AlphaFold confidence coloring theme
- Display warning if membrane preset calculation fails
- Add fallback if membrane preset calculation fails
- Update strucmotif integration with rcsb.org
- Mol* 2.2.1
- Reset camera for membrane preset
- Rename 'Structural Motif Search' to 'Structure Motif Search'
- Post-pare for pecos API changes
- Prepare for pecos API changes
- Moved code for motif alignment (i.e., talking to pecos) here
- structure selection: handle selection of full chains
- Strucmotif: relative URLs when running inside of sierra
- Code that determines assemblyId is now aware of label_asym_id
- Strucmotif UI now reports chained operators that can be used by sierra/arches/strucmotif
- Motif preset now works if no assemblyId was provided
- Rename experimental 'structOperExpression' prop to 'struct_oper_id'
- Visualize (an arbitrary number of) structural motifs
- Fix order of operators in strucmotif queries
- Mol* 2.0.7 & some internal cleanup
- Hide all but 2Fo-Fc map (RO-2751)
- Special density preset with 0(-ish) radius for ligands (RO-2751)
- Access to maps.rcsb.org via HTTPS
- Option to show membrane orientation preset
- Improve quality of ANVIL prediction
- Improve ANVIL & ASA calculation performance
- Clean up viewer init routine
- Multiple region selection (only last one was selected) bug fixed
- Added new methods for selection, creating components and focus
- 'Membrane Orientation' preset now honors assembly-ids
- feature density preset for ligand validation
- hide 'Membrane Orientation' representation from UI
- fix measurement labels
- hide 'Membrane Orientation' preset from UI
- structure export: getting transformed data
- membrane orientation preset by ANVIL
- make sure only structure objects are filtered in for export
- do not create unit cell object when alignments are loaded
- structure export: getting children for a referenced node correctly
- major version update of Mol*
- expose video export option
- warn when residues are more than 15 A apart (RO-2597)
- switch to 'model' when ligand preset is requested but ligand is not present in assembly '1' - HELP-16678
- limit number of exchanges per position
- hide State Tree panel
- structure alignment data visualization
- structural motif search wizard
- let's call this the initial release
