web
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TmMolStar


			
				
					
						
						
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			<h1>@rcsb/rcsb-saguaro-3d</h1>
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				<a href="#rcsb-saguaro-3d" id="rcsb-saguaro-3d" style="color: inherit; text-decoration: none;">
					<h1>rcsb-saguaro-3D</h1>
				</a>
				<p>RCSB Saguaro Web 3D is an open-source library built on the top of the <a href="https://rcsb.github.io/rcsb-saguaro">RCSB Saguaro 1D Feature Viewer</a>
					and <a href="https://github.com/rcsb/rcsb-molstar">RCSB Molstar</a> designed to display protein features at the <a href="https://www.rcsb.org">RCSB Web Site</a>.
					The package collects protein annotations from the <a href="https://1d-coordinates.rcsb.org">1D Coordinate Server</a>
					and the main <a href="https://data.rcsb.org">RCSB Data API</a> and generates Protein Feature Summaries.
				The package allows access to RCSB Saguaro and Molstar methods to add or change the displayed data. </p>
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				<a href="#cdn-javascript" id="cdn-javascript" style="color: inherit; text-decoration: none;">
					<h3>CDN JavaScript</h3>
				</a>
				<p><code>&lt;script src=&quot;https://cdn.jsdelivr.net/npm/@rcsb/rcsb-saguaro-3d@1.0.0/build/dist/app.js&quot; type=&quot;text/javascript&quot;&gt;&lt;/script&gt;</code></p>
				<a href="#node-module-instalation" id="node-module-instalation" style="color: inherit; text-decoration: none;">
					<h3>Node Module Instalation</h3>
				</a>
				<p><code>npm install @rcsb/rcsb-saguaro-3d</code></p>
				<a href="#building-amp-running" id="building-amp-running" style="color: inherit; text-decoration: none;">
					<h2>Building &amp; Running</h2>
				</a>
				<a href="#build-app" id="build-app" style="color: inherit; text-decoration: none;">
					<h3>Build app</h3>
				</a>
				<pre><code><span class="hljs-built_in">npm</span> install
<span class="hljs-built_in">npm</span> run buildApp</code></pre>
				<a href="#build-examples" id="build-examples" style="color: inherit; text-decoration: none;">
					<h3>Build examples</h3>
				</a>
				<pre><code>npm <span class="hljs-builtin-name">run</span> buildExamples</code></pre><p>From the root of the project:</p>
				<pre><code>http-server -p PORT-<span class="hljs-built_in">NUMBER</span></code></pre><p>and navigate to <code>localhost:PORT-NUMBER/build/examples/</code></p>
				<a href="#main-classes-and-methods" id="main-classes-and-methods" style="color: inherit; text-decoration: none;">
					<h3>Main Classes and Methods</h3>
				</a>
				<p>Class <strong><code>RcsbFv3DAssembly</code></strong> (<code>src/RcsbFv3D/RcsbFv3DAssembly.tsx</code>) builds a predefined view for PDB entries. This method is used in the RCSB PDB web portal
				to display 1D features on PDB entries (ex: <a href="https://www.rcsb.org/3d-sequence/4HHB">4hhb</a>). Source code example can be found in <code>src/examples/assembly/index.ts</code>.</p>
				<p>Class <strong><code>RcsbFv3DCustom</code></strong> file <code>src/RcsbFv3D/RcsbFv3DCustom.tsx</code> builds a customized view between one or more feature viewers and a single Molstar plugin.</p>
				<pre><code class="language-typescript"><span class="hljs-keyword">interface</span> RcsbFv3DCustomInterface <span class="hljs-keyword">extends</span> RcsbFv3DAbstractInterface {
    <span class="hljs-attr">structurePanelConfig</span>: RcsbFvStructureInterface;
    sequencePanelConfig: {
        <span class="hljs-attr">config</span>: CustomViewInterface;
        title?: <span class="hljs-built_in">string</span>;
        subtitle?: <span class="hljs-built_in">string</span>;
    };
}</code></pre>
				<p><img src=".github/img/config_img.png?raw=true" alt="Alt text" title="Custom config schema"></p>
				<a href="#contributing" id="contributing" style="color: inherit; text-decoration: none;">
					<h2>Contributing</h2>
				</a>
				<p>All contributions are welcome. Please, make a pull request or open an issue.</p>
				<a href="#license" id="license" style="color: inherit; text-decoration: none;">
					<h2>License</h2>
				</a>
				<p>The MIT License</p>
				<pre><code><span class="hljs-attribute">Copyright</span> (c) <span class="hljs-number">2021</span> - now, RCSB PDB and contributors</code></pre><p>Permission is hereby granted, free of charge, to any person obtaining a copy
					of this software and associated documentation files (the &quot;Software&quot;), to deal
					in the Software without restriction, including without limitation the rights
					to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
					copies of the Software, and to permit persons to whom the Software is
				furnished to do so, subject to the following conditions:</p>
				<p>The above copyright notice and this permission notice shall be included in
				all copies or substantial portions of the Software.</p>
				<p>THE SOFTWARE IS PROVIDED &quot;AS IS&quot;, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
					IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
					FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
					AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
					LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
					OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
				THE SOFTWARE.</p>
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