RcsbFv3DAssembly._internal_.ChemComp.html 77 KB

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  1. <!DOCTYPE html><html class="default"><head><meta charSet="utf-8"/><meta http-equiv="x-ua-compatible" content="IE=edge"/><title>ChemComp | @rcsb/rcsb-saguaro-3d</title><meta name="description" content="Documentation for @rcsb/rcsb-saguaro-3d"/><meta name="viewport" content="width=device-width, initial-scale=1"/><link rel="stylesheet" href="../assets/style.css"/><link rel="stylesheet" href="../assets/highlight.css"/><script async src="../assets/search.js" id="search-script"></script></head><body><script>document.body.classList.add(localStorage.getItem("tsd-theme") || "os")</script><header><div class="tsd-page-toolbar"><div class="container"><div class="table-wrap"><div class="table-cell" id="tsd-search" data-base=".."><div class="field"><label for="tsd-search-field" class="tsd-widget search no-caption">Search</label><input type="text" id="tsd-search-field"/></div><ul class="results"><li class="state loading">Preparing search index...</li><li class="state failure">The search index is not available</li></ul><a href="../index.html" class="title">@rcsb/rcsb-saguaro-3d</a></div><div class="table-cell" id="tsd-widgets"><div id="tsd-filter"><a href="#" class="tsd-widget options no-caption" data-toggle="options">Options</a><div class="tsd-filter-group"><div class="tsd-select" id="tsd-filter-visibility"><span class="tsd-select-label">All</span><ul class="tsd-select-list"><li data-value="public">Public</li><li data-value="protected">Public/Protected</li><li data-value="private" class="selected">All</li></ul></div> <input type="checkbox" id="tsd-filter-inherited" checked/><label class="tsd-widget" for="tsd-filter-inherited">Inherited</label><input type="checkbox" id="tsd-filter-externals" checked/><label class="tsd-widget" for="tsd-filter-externals">Externals</label></div></div><a href="#" class="tsd-widget menu no-caption" data-toggle="menu">Menu</a></div></div></div></div><div class="tsd-page-title"><div class="container"><ul class="tsd-breadcrumb"><li><a href="../modules.html">@rcsb/rcsb-saguaro-3d</a></li><li><a href="../modules/RcsbFv3DAssembly.html">RcsbFv3DAssembly</a></li><li><a href="../modules/RcsbFv3DAssembly._internal_.html">&lt;internal&gt;</a></li><li><a href="RcsbFv3DAssembly._internal_.ChemComp.html">ChemComp</a></li></ul><h1>Interface ChemComp </h1></div></div></header><div class="container container-main"><div class="row"><div class="col-8 col-content"><section class="tsd-panel tsd-hierarchy"><h3>Hierarchy</h3><ul class="tsd-hierarchy"><li><span class="target">ChemComp</span></li></ul></section><section class="tsd-panel-group tsd-index-group"><h2>Index</h2><section class="tsd-panel tsd-index-panel"><div class="tsd-index-content"><section class="tsd-index-section tsd-is-external"><h3>Properties</h3><ul class="tsd-index-list"><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#__typename" class="tsd-kind-icon">__typename</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#formula" class="tsd-kind-icon">formula</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#formula_weight" class="tsd-kind-icon">formula_<wbr/>weight</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#id" class="tsd-kind-icon">id</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#mon_nstd_parent_comp_id" class="tsd-kind-icon">mon_<wbr/>nstd_<wbr/>parent_<wbr/>comp_<wbr/>id</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#name" class="tsd-kind-icon">name</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#one_letter_code" class="tsd-kind-icon">one_<wbr/>letter_<wbr/>code</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#pdbx_ambiguous_flag" class="tsd-kind-icon">pdbx_<wbr/>ambiguous_<wbr/>flag</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#pdbx_formal_charge" class="tsd-kind-icon">pdbx_<wbr/>formal_<wbr/>charge</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#pdbx_initial_date" class="tsd-kind-icon">pdbx_<wbr/>initial_<wbr/>date</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#pdbx_modified_date" class="tsd-kind-icon">pdbx_<wbr/>modified_<wbr/>date</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#pdbx_processing_site" class="tsd-kind-icon">pdbx_<wbr/>processing_<wbr/>site</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#pdbx_release_status" class="tsd-kind-icon">pdbx_<wbr/>release_<wbr/>status</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#pdbx_replaced_by" class="tsd-kind-icon">pdbx_<wbr/>replaced_<wbr/>by</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#pdbx_replaces" class="tsd-kind-icon">pdbx_<wbr/>replaces</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#pdbx_subcomponent_list" class="tsd-kind-icon">pdbx_<wbr/>subcomponent_<wbr/>list</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#three_letter_code" class="tsd-kind-icon">three_<wbr/>letter_<wbr/>code</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.ChemComp.html#type" class="tsd-kind-icon">type</a></li></ul></section></div></section></section><section class="tsd-panel-group tsd-member-group tsd-is-external"><h2>Properties</h2><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="__typename" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> __typename<a href="#__typename" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">__typename<span class="tsd-signature-symbol">?:</span> <span class="tsd-signature-type">&quot;ChemComp&quot;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:114</li></ul></aside></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="formula" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> formula<a href="#formula" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">formula<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:139</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  2. <p>The formula for the chemical component. Formulae are written
  3. according to the following rules:</p>
  4. </div><div><p> (1) Only recognized element symbols may be used.</p>
  5. <p> (2) Each element symbol is followed by a &#39;count&#39; number. A count
  6. of &#39;1&#39; may be omitted.</p>
  7. <p> (3) A space or parenthesis must separate each cluster of
  8. (element symbol + count), but in general parentheses are
  9. not used.</p>
  10. <p> (4) The order of elements depends on whether carbon is
  11. present or not. If carbon is present, the order should be:
  12. C, then H, then the other elements in alphabetical order
  13. of their symbol. If carbon is not present, the elements
  14. are listed purely in alphabetic order of their symbol. This
  15. is the &#39;Hill&#39; system used by Chemical Abstracts.</p>
  16. <p>Examples:
  17. C18 H19 N7 O8 S</p>
  18. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="formula_weight" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> formula_<wbr/>weight<a href="#formula_weight" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">formula_<wbr/>weight<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:147</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  19. <p>Formula mass of the chemical component.</p>
  20. </div><div><p>Examples:
  21. null, null</p>
  22. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="id" class="tsd-anchor"></a><h3 class="tsd-anchor-link">id<a href="#id" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">id<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">string</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:162</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  23. <p>The value of _chem_comp.id must uniquely identify each item in
  24. the CHEM_COMP list.</p>
  25. </div><div><p> For protein polymer entities, this is the three-letter code for
  26. the amino acid.</p>
  27. <p> For nucleic acid polymer entities, this is the one-letter code
  28. for the base.</p>
  29. <p>Examples:
  30. ALA, VAL, DG, C</p>
  31. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="mon_nstd_parent_comp_id" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> mon_<wbr/>nstd_<wbr/>parent_<wbr/>comp_<wbr/>id<a href="#mon_nstd_parent_comp_id" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">mon_<wbr/>nstd_<wbr/>parent_<wbr/>comp_<wbr/>id<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span><span class="tsd-signature-symbol">[]</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:171</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  32. <p>The identifier for the parent component of the nonstandard
  33. component. May be be a comma separated list if this component
  34. is derived from multiple components.</p>
  35. </div><div><p> Items in this indirectly point to _chem_comp.id in
  36. the CHEM_COMP category.</p>
  37. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="name" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> name<a href="#name" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">name<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:179</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  38. <p>The full name of the component.</p>
  39. </div><div><p>Examples:
  40. alanine, valine, adenine, cytosine</p>
  41. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="one_letter_code" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> one_<wbr/>letter_<wbr/>code<a href="#one_letter_code" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">one_<wbr/>letter_<wbr/>code<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:193</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  42. <p>For standard polymer components, the one-letter code for
  43. the component. For non-standard polymer components, the
  44. one-letter code for parent component if this exists;
  45. otherwise, the one-letter code should be given as &#39;X&#39;.</p>
  46. </div><div><p> Components that derived from multiple parents components
  47. are described by a sequence of one-letter-codes.</p>
  48. <p>Examples:
  49. A, B, R, N, D, C, Q, E, Z, G, H, I, L, K, M, F, P, S, T, W, Y, V, U, O, X</p>
  50. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="pdbx_ambiguous_flag" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> pdbx_<wbr/>ambiguous_<wbr/>flag<a href="#pdbx_ambiguous_flag" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">pdbx_<wbr/>ambiguous_<wbr/>flag<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:201</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  51. <p>A preliminary classification used by PDB to indicate
  52. that the chemistry of this component while described
  53. as clearly as possible is still ambiguous. Software
  54. tools may not be able to process this component
  55. definition.</p>
  56. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="pdbx_formal_charge" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> pdbx_<wbr/>formal_<wbr/>charge<a href="#pdbx_formal_charge" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">pdbx_<wbr/>formal_<wbr/>charge<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:206</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  57. <p>The net integer charge assigned to this component. This is the
  58. formal charge assignment normally found in chemical diagrams.</p>
  59. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="pdbx_initial_date" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> pdbx_<wbr/>initial_<wbr/>date<a href="#pdbx_initial_date" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">pdbx_<wbr/>initial_<wbr/>date<span class="tsd-signature-symbol">?:</span> <span class="tsd-signature-type">any</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:208</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  60. <p>Date component was added to database.</p>
  61. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="pdbx_modified_date" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> pdbx_<wbr/>modified_<wbr/>date<a href="#pdbx_modified_date" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">pdbx_<wbr/>modified_<wbr/>date<span class="tsd-signature-symbol">?:</span> <span class="tsd-signature-type">any</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:210</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  62. <p>Date component was last modified.</p>
  63. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="pdbx_processing_site" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> pdbx_<wbr/>processing_<wbr/>site<a href="#pdbx_processing_site" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">pdbx_<wbr/>processing_<wbr/>site<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:219</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  64. <p>This data item identifies the deposition site that processed
  65. this chemical component defintion.</p>
  66. </div><div><p>Allowable values:
  67. EBI, PDBC, PDBE, PDBJ, RCSB</p>
  68. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="pdbx_release_status" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> pdbx_<wbr/>release_<wbr/>status<a href="#pdbx_release_status" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">pdbx_<wbr/>release_<wbr/>status<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:227</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  69. <p>This data item holds the current release status for the component.</p>
  70. </div><div><p>Allowable values:
  71. DEL, HOLD, HPUB, OBS, REF_ONLY, REL</p>
  72. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="pdbx_replaced_by" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> pdbx_<wbr/>replaced_<wbr/>by<a href="#pdbx_replaced_by" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">pdbx_<wbr/>replaced_<wbr/>by<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:236</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  73. <p>Identifies the _chem_comp.id of the component that
  74. has replaced this component.</p>
  75. </div><div><p>Examples:
  76. q11, tvx</p>
  77. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="pdbx_replaces" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> pdbx_<wbr/>replaces<a href="#pdbx_replaces" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">pdbx_<wbr/>replaces<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:246</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  78. <p>Identifies the _chem_comp.id&#39;s of the components
  79. which have been replaced by this component.
  80. Multiple id codes should be separated by commas.</p>
  81. </div><div><p>Examples:
  82. q11, tvx,atv</p>
  83. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="pdbx_subcomponent_list" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> pdbx_<wbr/>subcomponent_<wbr/>list<a href="#pdbx_subcomponent_list" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">pdbx_<wbr/>subcomponent_<wbr/>list<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:254</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  84. <p>The list of subcomponents contained in this component.</p>
  85. </div><div><p>Examples:
  86. TSM DPH HIS CHF EMR</p>
  87. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="three_letter_code" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> three_<wbr/>letter_<wbr/>code<a href="#three_letter_code" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">three_<wbr/>letter_<wbr/>code<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:268</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  88. <p>For standard polymer components, the common three-letter code for
  89. the component. Non-standard polymer components and non-polymer
  90. components are also assigned three-letter-codes.</p>
  91. </div><div><p> For ambiguous polymer components three-letter code should
  92. be given as &#39;UNK&#39;. Ambiguous ions are assigned the code &#39;UNX&#39;.
  93. Ambiguous non-polymer components are assigned the code &#39;UNL&#39;.</p>
  94. <p>Examples:
  95. ALA, ARG, ASN, ASP, ASX, CYS, GLN, GLU, GLY, GLX, HIS, ILE, LEU, LYS, MET, PHE, PRO, SER, THR, TRP, TYR, VAL, 1MA, 5MC, OMC, 1MG, 2MG, M2G, 7MG, 0MG, H2U, 5MU, PSU, ACE, FOR, HOH, UNK</p>
  96. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="type" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> type<a href="#type" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">type<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:279</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  97. <p>For standard polymer components, the type of the monomer.
  98. Note that monomers that will form polymers are of three types:
  99. linking monomers, monomers with some type of N-terminal (or 5&#39;)
  100. cap and monomers with some type of C-terminal (or 3&#39;) cap.</p>
  101. </div><div><p>Allowable values:
  102. D-beta-peptide, C-gamma linking, D-gamma-peptide, C-delta linking, D-peptide COOH carboxy terminus, D-peptide NH3 amino terminus, D-peptide linking, D-saccharide, D-saccharide, alpha linking, D-saccharide, beta linking, DNA OH 3 prime terminus, DNA OH 5 prime terminus, DNA linking, L-DNA linking, L-RNA linking, L-beta-peptide, C-gamma linking, L-gamma-peptide, C-delta linking, L-peptide COOH carboxy terminus, L-peptide NH3 amino terminus, L-peptide linking, L-saccharide, L-saccharide, alpha linking, L-saccharide, beta linking, RNA OH 3 prime terminus, RNA OH 5 prime terminus, RNA linking, non-polymer, other, peptide linking, peptide-like, saccharide</p>
  103. </div></div></section></section></div><div class="col-4 col-menu menu-sticky-wrap menu-highlight"><nav class="tsd-navigation primary"><ul><li class=""><a href="../modules.html">Modules</a></li><li class="current tsd-kind-module"><a href="../modules/RcsbFv3DAssembly.html">Rcsb<wbr/>Fv3DAssembly</a><ul><li class="current tsd-kind-namespace tsd-parent-kind-module"><a href="../modules/RcsbFv3DAssembly._internal_.html">&lt;internal&gt;</a><ul><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.__Users_joan_devel_rcsb_saguaro_3d_node_modules_molstar_lib_mol_geo_geometry_text_font_atlas_.html">&quot;/<wbr/>Users/joan/devel/rcsb-<wbr/>saguaro-<wbr/>3d/node_<wbr/>modules/molstar/lib/mol-<wbr/>geo/geometry/text/font-<wbr/>atlas&quot;</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a 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