RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html 72 KB

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  1. <!DOCTYPE html><html class="default"><head><meta charSet="utf-8"/><meta http-equiv="x-ua-compatible" content="IE=edge"/><title>RcsbEntitySourceOrganism | @rcsb/rcsb-saguaro-3d</title><meta name="description" content="Documentation for @rcsb/rcsb-saguaro-3d"/><meta name="viewport" content="width=device-width, initial-scale=1"/><link rel="stylesheet" href="../assets/style.css"/><link rel="stylesheet" href="../assets/highlight.css"/><script async src="../assets/search.js" id="search-script"></script></head><body><script>document.body.classList.add(localStorage.getItem("tsd-theme") || "os")</script><header><div class="tsd-page-toolbar"><div class="container"><div class="table-wrap"><div class="table-cell" id="tsd-search" data-base=".."><div class="field"><label for="tsd-search-field" class="tsd-widget search no-caption">Search</label><input type="text" id="tsd-search-field"/></div><ul class="results"><li class="state loading">Preparing search index...</li><li class="state failure">The search index is not available</li></ul><a href="../index.html" class="title">@rcsb/rcsb-saguaro-3d</a></div><div class="table-cell" id="tsd-widgets"><div id="tsd-filter"><a href="#" class="tsd-widget options no-caption" data-toggle="options">Options</a><div class="tsd-filter-group"><div class="tsd-select" id="tsd-filter-visibility"><span class="tsd-select-label">All</span><ul class="tsd-select-list"><li data-value="public">Public</li><li data-value="protected">Public/Protected</li><li data-value="private" class="selected">All</li></ul></div> <input type="checkbox" id="tsd-filter-inherited" checked/><label class="tsd-widget" for="tsd-filter-inherited">Inherited</label><input type="checkbox" id="tsd-filter-externals" checked/><label class="tsd-widget" for="tsd-filter-externals">Externals</label></div></div><a href="#" class="tsd-widget menu no-caption" data-toggle="menu">Menu</a></div></div></div></div><div class="tsd-page-title"><div class="container"><ul class="tsd-breadcrumb"><li><a href="../modules.html">@rcsb/rcsb-saguaro-3d</a></li><li><a href="../modules/RcsbFv3DAssembly.html">RcsbFv3DAssembly</a></li><li><a href="../modules/RcsbFv3DAssembly._internal_.html">&lt;internal&gt;</a></li><li><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html">RcsbEntitySourceOrganism</a></li></ul><h1>Interface RcsbEntitySourceOrganism </h1></div></div></header><div class="container container-main"><div class="row"><div class="col-8 col-content"><section class="tsd-panel tsd-hierarchy"><h3>Hierarchy</h3><ul class="tsd-hierarchy"><li><span class="target">RcsbEntitySourceOrganism</span></li></ul></section><section class="tsd-panel-group tsd-index-group"><h2>Index</h2><section class="tsd-panel tsd-index-panel"><div class="tsd-index-content"><section class="tsd-index-section tsd-is-external"><h3>Properties</h3><ul class="tsd-index-list"><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#__typename" class="tsd-kind-icon">__typename</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#beg_seq_num" class="tsd-kind-icon">beg_<wbr/>seq_<wbr/>num</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#common_name" class="tsd-kind-icon">common_<wbr/>name</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#end_seq_num" class="tsd-kind-icon">end_<wbr/>seq_<wbr/>num</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#ncbi_common_names" class="tsd-kind-icon">ncbi_<wbr/>common_<wbr/>names</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#ncbi_parent_scientific_name" class="tsd-kind-icon">ncbi_<wbr/>parent_<wbr/>scientific_<wbr/>name</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#ncbi_scientific_name" class="tsd-kind-icon">ncbi_<wbr/>scientific_<wbr/>name</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#ncbi_taxonomy_id" class="tsd-kind-icon">ncbi_<wbr/>taxonomy_<wbr/>id</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#pdbx_src_id" class="tsd-kind-icon">pdbx_<wbr/>src_<wbr/>id</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#provenance_source" class="tsd-kind-icon">provenance_<wbr/>source</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#rcsb_gene_name" class="tsd-kind-icon">rcsb_<wbr/>gene_<wbr/>name</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#scientific_name" class="tsd-kind-icon">scientific_<wbr/>name</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#source_type" class="tsd-kind-icon">source_<wbr/>type</a></li><li class="tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganism.html#taxonomy_lineage" class="tsd-kind-icon">taxonomy_<wbr/>lineage</a></li></ul></section></div></section></section><section class="tsd-panel-group tsd-member-group tsd-is-external"><h2>Properties</h2><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="__typename" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> __typename<a href="#__typename" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">__typename<span class="tsd-signature-symbol">?:</span> <span class="tsd-signature-type">&quot;RcsbEntitySourceOrganism&quot;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8517</li></ul></aside></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="beg_seq_num" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> beg_<wbr/>seq_<wbr/>num<a href="#beg_seq_num" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">beg_<wbr/>seq_<wbr/>num<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8524</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  2. <p>The beginning polymer sequence position for the polymer section corresponding
  3. to this source.</p>
  4. </div><div><p> A reference to the sequence position in the entity_poly category.</p>
  5. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="common_name" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> common_<wbr/>name<a href="#common_name" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">common_<wbr/>name<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8526</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  6. <p>The common name for the source organism assigned by the PDB depositor.</p>
  7. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="end_seq_num" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> end_<wbr/>seq_<wbr/>num<a href="#end_seq_num" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">end_<wbr/>seq_<wbr/>num<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8533</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  8. <p>The ending polymer sequence position for the polymer section corresponding
  9. to this source.</p>
  10. </div><div><p> A reference to the sequence position in the entity_poly category.</p>
  11. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="ncbi_common_names" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> ncbi_<wbr/>common_<wbr/>names<a href="#ncbi_common_names" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">ncbi_<wbr/>common_<wbr/>names<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span><span class="tsd-signature-symbol">[]</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8554</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  12. <p>Common names associated with this taxonomy code aggregated by the NCBI Taxonomy Database.</p>
  13. </div><div><p> These name correspond to the taxonomy identifier assigned by the PDB depositor.</p>
  14. <p>References:</p>
  15. <p>Sayers EW, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V,
  16. Church DM, DiCuccio M, Edgar R, Federhen S, Feolo M, Geer LY,
  17. Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Madden TL, Maglott DR,
  18. Miller V, Mizrachi I, Ostell J, Pruitt KD, Schuler GD, Sequeira E,
  19. Sherry ST, Shumway M, Sirotkin K, Souvorov A, Starchenko G,
  20. Tatusova TA, Wagner L, Yaschenko E, Ye J (2009). Database resources
  21. of the National Center for Biotechnology Information. Nucleic Acids
  22. Res. 2009 Jan;37(Database issue):D5-15. Epub 2008 Oct 21.</p>
  23. <p>Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW (2009).
  24. GenBank. Nucleic Acids Res. 2009 Jan;37(Database issue):D26-31.
  25. Epub 2008 Oct 21.</p>
  26. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="ncbi_parent_scientific_name" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> ncbi_<wbr/>parent_<wbr/>scientific_<wbr/>name<a href="#ncbi_parent_scientific_name" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">ncbi_<wbr/>parent_<wbr/>scientific_<wbr/>name<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8580</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  27. <p>A parent scientific name in the NCBI taxonomy hierarchy of the source organism assigned by the PDB depositor.
  28. For cellular organism this corresponds to a superkingdom (e.g., Archaea, Bacteria, Eukaryota). For viruses this
  29. corresponds to a clade (e.g. Adnaviria, Bicaudaviridae, Clavaviridae). For other and unclassified entries this
  30. corresponds to the first level of any taxonomic rank below the root level.</p>
  31. </div><div><p>References:</p>
  32. <p>Sayers EW, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V,
  33. Church DM, DiCuccio M, Edgar R, Federhen S, Feolo M, Geer LY,
  34. Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Madden TL, Maglott DR,
  35. Miller V, Mizrachi I, Ostell J, Pruitt KD, Schuler GD, Sequeira E,
  36. Sherry ST, Shumway M, Sirotkin K, Souvorov A, Starchenko G,
  37. Tatusova TA, Wagner L, Yaschenko E, Ye J (2009). Database resources
  38. of the National Center for Biotechnology Information. Nucleic Acids
  39. Res. 2009 Jan;37(Database issue):D5-15. Epub 2008 Oct 21.</p>
  40. <p>Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW (2009).
  41. GenBank. Nucleic Acids Res. 2009 Jan;37(Database issue):D26-31.
  42. Epub 2008 Oct 21.</p>
  43. <p>Examples:
  44. Archaea, Bacteria, Eukaryota, Adnaviria, Bicaudaviridae, Clavaviridae, Duplodnaviria</p>
  45. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="ncbi_scientific_name" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> ncbi_<wbr/>scientific_<wbr/>name<a href="#ncbi_scientific_name" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">ncbi_<wbr/>scientific_<wbr/>name<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8602</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  46. <p>The scientific name associated with this taxonomy code aggregated by the NCBI Taxonomy Database.</p>
  47. </div><div><p> This name corresponds to the taxonomy identifier assigned by the PDB depositor.</p>
  48. <p>References:</p>
  49. <p>Sayers EW, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V,
  50. Church DM, DiCuccio M, Edgar R, Federhen S, Feolo M, Geer LY,
  51. Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Madden TL, Maglott DR,
  52. Miller V, Mizrachi I, Ostell J, Pruitt KD, Schuler GD, Sequeira E,
  53. Sherry ST, Shumway M, Sirotkin K, Souvorov A, Starchenko G,
  54. Tatusova TA, Wagner L, Yaschenko E, Ye J (2009). Database resources
  55. of the National Center for Biotechnology Information. Nucleic Acids
  56. Res. 2009 Jan;37(Database issue):D5-15. Epub 2008 Oct 21.</p>
  57. <p>Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW (2009).
  58. GenBank. Nucleic Acids Res. 2009 Jan;37(Database issue):D26-31.
  59. Epub 2008 Oct 21.</p>
  60. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="ncbi_taxonomy_id" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> ncbi_<wbr/>taxonomy_<wbr/>id<a href="#ncbi_taxonomy_id" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">ncbi_<wbr/>taxonomy_<wbr/>id<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">number</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8616</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  61. <p>NCBI Taxonomy identifier for the gene source organism assigned by the PDB depositor.</p>
  62. </div><div><p> Reference:</p>
  63. <p> Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD,
  64. Tatusova TA, Rapp BA (2000). Database resources of the National
  65. Center for Biotechnology Information. Nucleic Acids Res 2000 Jan
  66. 1;28(1):10-4</p>
  67. <p> Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA,
  68. Wheeler DL (2000). GenBank. Nucleic Acids Res 2000 Jan 1;28(1):15-18.</p>
  69. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="pdbx_src_id" class="tsd-anchor"></a><h3 class="tsd-anchor-link">pdbx_<wbr/>src_<wbr/>id<a href="#pdbx_src_id" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">pdbx_<wbr/>src_<wbr/>id<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">string</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8618</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  70. <p>An identifier for the entity segment.</p>
  71. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="provenance_source" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> provenance_<wbr/>source<a href="#provenance_source" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">provenance_<wbr/>source<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8626</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  72. <p>A code indicating the provenance of the source organism details for the entity</p>
  73. </div><div><p>Allowable values:
  74. PDB Primary Data</p>
  75. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="rcsb_gene_name" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> rcsb_<wbr/>gene_<wbr/>name<a href="#rcsb_gene_name" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">rcsb_<wbr/>gene_<wbr/>name<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganismRcsbGeneName.html" class="tsd-signature-type" data-tsd-kind="Interface">RcsbEntitySourceOrganismRcsbGeneName</a><span class="tsd-signature-symbol">&gt;</span><span class="tsd-signature-symbol">[]</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8627</li></ul></aside></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="scientific_name" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> scientific_<wbr/>name<a href="#scientific_name" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">scientific_<wbr/>name<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8629</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  76. <p>The scientific name of the source organism assigned by the PDB depositor.</p>
  77. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="source_type" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> source_<wbr/>type<a href="#source_type" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">source_<wbr/>type<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8637</li></ul></aside><div class="tsd-comment tsd-typography"><div class="lead">
  78. <p>The source type for the entity</p>
  79. </div><div><p>Allowable values:
  80. genetically engineered, natural, synthetic</p>
  81. </div></div></section><section class="tsd-panel tsd-member tsd-kind-property tsd-parent-kind-interface tsd-is-external"><a id="taxonomy_lineage" class="tsd-anchor"></a><h3 class="tsd-anchor-link"><span class="tsd-flag ts-flagOptional">Optional</span> taxonomy_<wbr/>lineage<a href="#taxonomy_lineage" aria-label="Permalink" class="tsd-anchor-icon"><svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-link" viewBox="0 0 24 24" stroke-width="2" stroke="currentColor" fill="none" stroke-linecap="round" stroke-linejoin="round"><path stroke="none" d="M0 0h24v24H0z" fill="none"></path><path d="M10 14a3.5 3.5 0 0 0 5 0l4 -4a3.5 3.5 0 0 0 -5 -5l-.5 .5"></path><path d="M14 10a3.5 3.5 0 0 0 -5 0l-4 4a3.5 3.5 0 0 0 5 5l.5 -.5"></path></svg></a></h3><div class="tsd-signature tsd-kind-icon">taxonomy_<wbr/>lineage<span class="tsd-signature-symbol">?:</span> <a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><a href="../modules/RcsbFv3DAssembly._internal_.html" class="tsd-signature-type" data-tsd-kind="Namespace">&lt;internal&gt;</a><span class="tsd-signature-symbol">.</span><a href="../modules/RcsbFv3DAssembly._internal_.html#Maybe-1" class="tsd-signature-type" data-tsd-kind="Type alias">Maybe</a><span class="tsd-signature-symbol">&lt;</span><a href="RcsbFv3DAssembly._internal_.RcsbEntitySourceOrganismTaxonomyLineage.html" class="tsd-signature-type" data-tsd-kind="Interface">RcsbEntitySourceOrganismTaxonomyLineage</a><span class="tsd-signature-symbol">&gt;</span><span class="tsd-signature-symbol">[]</span><span class="tsd-signature-symbol">&gt;</span></div><aside class="tsd-sources"><ul><li>Defined in node_modules/@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes.d.ts:8638</li></ul></aside></section></section></div><div class="col-4 col-menu menu-sticky-wrap menu-highlight"><nav class="tsd-navigation primary"><ul><li class=""><a href="../modules.html">Modules</a></li><li class="current tsd-kind-module"><a href="../modules/RcsbFv3DAssembly.html">Rcsb<wbr/>Fv3DAssembly</a><ul><li class="current tsd-kind-namespace tsd-parent-kind-module"><a href="../modules/RcsbFv3DAssembly._internal_.html">&lt;internal&gt;</a><ul><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.__Users_joan_devel_rcsb_saguaro_3d_node_modules_molstar_lib_mol_geo_geometry_text_font_atlas_.html">&quot;/<wbr/>Users/joan/devel/rcsb-<wbr/>saguaro-<wbr/>3d/node_<wbr/>modules/molstar/lib/mol-<wbr/>geo/geometry/text/font-<wbr/>atlas&quot;</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a 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href="../modules/RcsbFv3DAssembly._internal_.Assembly.html">Assembly</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.Asset.html">Asset</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.AtomicHierarchy.html">Atomic<wbr/>Hierarchy</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.AtomicIndex.html">Atomic<wbr/>Index</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.Axes3D.html">Axes3D</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.Binding.html">Binding</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.BitFlags.html">Bit<wbr/>Flags</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.Box3D.html">Box3D</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.Bundle.html">Bundle</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.ButtonsType.html">Buttons<wbr/>Type</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.Camera.html">Camera</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a href="../modules/RcsbFv3DAssembly._internal_.CameraTransitionManager.html">Camera<wbr/>Transition<wbr/>Manager</a></li><li class=" tsd-kind-namespace tsd-parent-kind-namespace tsd-is-external"><a 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