TmMolStar/src/mol-io/reader/cif/text/field.ts

/**
 * Copyright (c) 2017-2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
 *
 * @author David Sehnal <david.sehnal@gmail.com>
 * @author Alexander Rose <alexander.rose@weirdbyte.de>
 */

import { Column, ColumnHelpers } from 'mol-data/db'
import * as TokenColumn from '../../common/text/column/token'
import { Tokens } from '../../common/text/tokenizer'
import * as Data from '../data-model'
import { parseInt as fastParseInt, parseFloat as fastParseFloat } from '../../common/text/number-parser'

export default function CifTextField(tokens: Tokens, rowCount: number): Data.CifField {
    const { data, indices } = tokens;

    const str: Data.CifField['str'] = row => {
        const ret = data.substring(indices[2 * row], indices[2 * row + 1]);
        if (ret === '.' || ret === '?') return '';
        return ret;
    };

    const int: Data.CifField['int'] = row => {
        return fastParseInt(data, indices[2 * row], indices[2 * row + 1]) || 0;
    };

    const float: Data.CifField['float'] = row => {
        return fastParseFloat(data, indices[2 * row], indices[2 * row + 1]) || 0;
    };

    const valueKind: Data.CifField['valueKind'] = row => {
        const s = indices[2 * row];
        if (indices[2 * row + 1] - s !== 1) return Column.ValueKind.Present;
        const v = data.charCodeAt(s);
        if (v === 46 /* . */) return Column.ValueKind.NotPresent;
        if (v === 63 /* ? */) return Column.ValueKind.Unknown;
        return Column.ValueKind.Present;
    };

    return {
        __array: void 0,
        binaryEncoding: void 0,
        isDefined: true,
        rowCount,
        str,
        int,
        float,
        valueKind,
        areValuesEqual: TokenColumn.areValuesEqualProvider(tokens),
        toStringArray: params => ColumnHelpers.createAndFillArray(rowCount, str, params),
        toIntArray: params => ColumnHelpers.createAndFillArray(rowCount, int, params),
        toFloatArray: params => ColumnHelpers.createAndFillArray(rowCount, float, params)
    }
}