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@@ -4,7 +4,7 @@ export type InputMaybe<T> = Maybe<T>;
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export type Exact<T extends { [key: string]: unknown }> = { [K in keyof T]: T[K] };
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export type MakeOptional<T, K extends keyof T> = Omit<T, K> & { [SubKey in K]?: Maybe<T[SubKey]> };
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export type MakeMaybe<T, K extends keyof T> = Omit<T, K> & { [SubKey in K]: Maybe<T[SubKey]> };
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-// Generated on 2022-08-20T16:36:05-07:00
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+// Generated on 2022-12-03T21:55:37-08:00
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/** All built-in and custom scalars, mapped to their actual values */
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export type Scalars = {
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@@ -343,6 +343,14 @@ export type Citation = {
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*
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*/
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readonly journal_abbrev?: Maybe<Scalars['String']>;
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+ /**
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+ * Full name of the cited journal; relevant for journal articles.
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+ *
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+ * Examples:
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+ * Journal of Molecular Biology
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+ *
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+ */
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+ readonly journal_full?: Maybe<Scalars['String']>;
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/**
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* The American Society for Testing and Materials (ASTM) code
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* assigned to the journal cited (also referred to as the CODEN
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@@ -550,6 +558,7 @@ export type CoreBranchedEntityInstance = {
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readonly rcsb_id: Scalars['String'];
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readonly rcsb_latest_revision?: Maybe<RcsbLatestRevision>;
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readonly rcsb_ligand_neighbors?: Maybe<ReadonlyArray<Maybe<RcsbLigandNeighbors>>>;
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+ readonly struct_asym?: Maybe<StructAsym>;
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};
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export type CoreChemComp = {
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@@ -661,6 +670,7 @@ export type CoreEntry = {
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readonly exptl?: Maybe<ReadonlyArray<Maybe<Exptl>>>;
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readonly exptl_crystal?: Maybe<ReadonlyArray<Maybe<ExptlCrystal>>>;
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readonly exptl_crystal_grow?: Maybe<ReadonlyArray<Maybe<ExptlCrystalGrow>>>;
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+ readonly ma_data?: Maybe<ReadonlyArray<Maybe<MaData>>>;
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/** Get all non-polymer (non-solvent) entities for this PDB entry. */
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readonly nonpolymer_entities?: Maybe<ReadonlyArray<Maybe<CoreNonpolymerEntity>>>;
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readonly pdbx_SG_project?: Maybe<ReadonlyArray<Maybe<PdbxSgProject>>>;
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@@ -701,6 +711,7 @@ export type CoreEntry = {
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/** The list of content types associated with this entry. */
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readonly rcsb_associated_holdings?: Maybe<CurrentEntry>;
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readonly rcsb_binding_affinity?: Maybe<ReadonlyArray<Maybe<RcsbBindingAffinity>>>;
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+ readonly rcsb_comp_model_provenance?: Maybe<RcsbCompModelProvenance>;
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readonly rcsb_entry_container_identifiers: RcsbEntryContainerIdentifiers;
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readonly rcsb_entry_group_membership?: Maybe<ReadonlyArray<Maybe<RcsbEntryGroupMembership>>>;
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readonly rcsb_entry_info: RcsbEntryInfo;
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@@ -713,6 +724,7 @@ export type CoreEntry = {
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*
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*/
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readonly rcsb_id: Scalars['String'];
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+ readonly rcsb_ma_qa_metric_global?: Maybe<ReadonlyArray<Maybe<RcsbMaQaMetricGlobal>>>;
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readonly rcsb_primary_citation?: Maybe<RcsbPrimaryCitation>;
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readonly refine?: Maybe<ReadonlyArray<Maybe<Refine>>>;
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readonly refine_analyze?: Maybe<ReadonlyArray<Maybe<RefineAnalyze>>>;
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@@ -786,6 +798,7 @@ export type CoreNonpolymerEntityInstance = {
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readonly rcsb_nonpolymer_instance_validation_score?: Maybe<ReadonlyArray<Maybe<RcsbNonpolymerInstanceValidationScore>>>;
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readonly rcsb_nonpolymer_struct_conn?: Maybe<ReadonlyArray<Maybe<RcsbNonpolymerStructConn>>>;
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readonly rcsb_target_neighbors?: Maybe<ReadonlyArray<Maybe<RcsbTargetNeighbors>>>;
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+ readonly struct_asym?: Maybe<StructAsym>;
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};
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export type CorePfam = {
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@@ -919,6 +932,7 @@ export type CorePolymerEntityInstance = {
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readonly rcsb_polymer_instance_feature?: Maybe<ReadonlyArray<Maybe<RcsbPolymerInstanceFeature>>>;
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readonly rcsb_polymer_instance_feature_summary?: Maybe<ReadonlyArray<Maybe<RcsbPolymerInstanceFeatureSummary>>>;
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readonly rcsb_polymer_struct_conn?: Maybe<ReadonlyArray<Maybe<RcsbPolymerStructConn>>>;
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+ readonly struct_asym?: Maybe<StructAsym>;
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};
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export type CorePubmed = {
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@@ -1284,9 +1298,9 @@ export type Em2dCrystalEntity = {
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readonly id: Scalars['String'];
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/** pointer to _em_image_processing.id in the EM_IMAGE_PROCESSING category. */
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readonly image_processing_id: Scalars['String'];
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- /** Unit-cell length a in Angstroms. */
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+ /** Unit-cell length a in angstroms. */
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readonly length_a?: Maybe<Scalars['Float']>;
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- /** Unit-cell length b in Angstroms. */
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+ /** Unit-cell length b in angstroms. */
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readonly length_b?: Maybe<Scalars['Float']>;
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/** Thickness of 2D crystal */
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readonly length_c?: Maybe<Scalars['Float']>;
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@@ -1317,11 +1331,11 @@ export type Em3dCrystalEntity = {
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readonly id: Scalars['String'];
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/** pointer to _em_image_processing.id in the EM_IMAGE_PROCESSING category. */
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readonly image_processing_id: Scalars['String'];
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- /** Unit-cell length a in Angstroms. */
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+ /** Unit-cell length a in angstroms. */
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readonly length_a?: Maybe<Scalars['Float']>;
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- /** Unit-cell length b in Angstroms. */
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+ /** Unit-cell length b in angstroms. */
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readonly length_b?: Maybe<Scalars['Float']>;
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- /** Unit-cell length c in Angstroms. */
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+ /** Unit-cell length c in angstroms. */
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readonly length_c?: Maybe<Scalars['Float']>;
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/**
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* Space group name.
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@@ -1482,7 +1496,7 @@ export type Em3dReconstruction = {
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*/
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readonly refinement_type?: Maybe<Scalars['String']>;
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/**
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- * The final resolution (in Angstroms)of the 3D reconstruction.
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+ * The final resolution (in angstroms)of the 3D reconstruction.
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*
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* Examples:
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* null, null
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@@ -1558,7 +1572,7 @@ export type EmDiffractionShell = {
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*/
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readonly fourier_space_coverage?: Maybe<Scalars['Float']>;
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/**
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- * High resolution limit for this shell (Angstroms)
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+ * High resolution limit for this shell (angstroms)
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*
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* Examples:
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* null
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@@ -1568,7 +1582,7 @@ export type EmDiffractionShell = {
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/** Unique identifier for the category em_diffraction_shell */
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readonly id: Scalars['String'];
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/**
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- * Low resolution limit for this shell (Angstroms)
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+ * Low resolution limit for this shell (angstroms)
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*
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* Examples:
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* null
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@@ -1614,7 +1628,7 @@ export type EmDiffractionStats = {
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*/
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readonly fourier_space_coverage?: Maybe<Scalars['Float']>;
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/**
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- * High resolution limit of the structure factor data, in Angstroms
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+ * High resolution limit of the structure factor data, in angstroms
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*
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* Examples:
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* null
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@@ -1998,12 +2012,12 @@ export type EmImaging = {
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/** The magnification indicated by the microscope readout. */
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readonly nominal_magnification?: Maybe<Scalars['Int']>;
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/**
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- * The specimen temperature maximum (degrees Kelvin) for the duration
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+ * The specimen temperature maximum (kelvin) for the duration
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* of imaging.
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*/
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readonly recording_temperature_maximum?: Maybe<Scalars['Float']>;
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/**
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- * The specimen temperature minimum (degrees Kelvin) for the duration
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+ * The specimen temperature minimum (kelvin) for the duration
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* of imaging.
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*/
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readonly recording_temperature_minimum?: Maybe<Scalars['Float']>;
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@@ -2028,7 +2042,7 @@ export type EmImaging = {
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/** Foreign key to the EM_SPECIMEN category */
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readonly specimen_id?: Maybe<Scalars['String']>;
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/**
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- * The mean specimen stage temperature (degrees Kelvin) during imaging
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+ * The mean specimen stage temperature (in kelvin) during imaging
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* in the microscope.
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*/
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readonly temperature?: Maybe<Scalars['Float']>;
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@@ -2215,7 +2229,7 @@ export type EmStaining = {
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};
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export type EmVitrification = {
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- /** The temperature (in degrees Kelvin) of the sample just prior to vitrification. */
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+ /** The temperature (in kelvin) of the sample just prior to vitrification. */
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readonly chamber_temperature?: Maybe<Scalars['Float']>;
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/**
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* This is the name of the cryogen.
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@@ -2259,7 +2273,7 @@ export type EmVitrification = {
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/** This data item is a pointer to _em_specimen.id */
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readonly specimen_id: Scalars['String'];
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/**
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- * The vitrification temperature (in degrees Kelvin), e.g.,
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+ * The vitrification temperature (in kelvin), e.g.,
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* temperature of the plunge instrument cryogen bath.
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*/
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readonly temp?: Maybe<Scalars['Float']>;
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@@ -2364,6 +2378,14 @@ export type EntityPoly = {
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*
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*/
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readonly pdbx_seq_one_letter_code_can?: Maybe<Scalars['String']>;
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+ /**
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+ * Evidence for the assignment of the polymer sequence.
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+ *
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+ * Allowable values:
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+ * depositor provided, derived from coordinates
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+ *
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+ */
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+ readonly pdbx_sequence_evidence_code?: Maybe<Scalars['String']>;
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/**
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* The PDB strand/chain id(s) corresponding to this polymer entity.
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*
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@@ -3005,6 +3027,8 @@ export type Entry = {
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* identifier.
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*/
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readonly id: Scalars['String'];
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+ /** An identifier for the model collection associated with the entry. */
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+ readonly ma_collection_id?: Maybe<Scalars['String']>;
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};
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export type Exptl = {
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@@ -3263,6 +3287,29 @@ export type InterfacePartnerFeatureFeaturePositions = {
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readonly values?: Maybe<ReadonlyArray<Maybe<Scalars['Float']>>>;
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};
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+export type MaData = {
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+ /**
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+ * The type of data held in the dataset.
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+ *
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+ * Allowable values:
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+ * coevolution MSA, input structure, model coordinates, other, polymeric template library, spatial restraints, target, target-template alignment, template structure
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+ *
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+ */
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+ readonly content_type?: Maybe<Scalars['String']>;
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+ /** Details for other content types. */
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+ readonly content_type_other_details?: Maybe<Scalars['String']>;
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+ /** A unique identifier for the data. */
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+ readonly id: Scalars['Int'];
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+ /**
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+ * An author-given name for the content held in the dataset.
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+ *
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+ * Examples:
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+ * NMR NOE Distances, Target Template Alignment, Coevolution Data
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+ *
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+ */
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+ readonly name?: Maybe<Scalars['String']>;
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+};
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+
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export type MethodDetails = {
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/** A description of special aspects of the clustering process */
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readonly description?: Maybe<Scalars['String']>;
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@@ -4199,7 +4246,7 @@ export type PdbxNmrExptlSampleConditions = {
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*/
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readonly pressure_units?: Maybe<Scalars['String']>;
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/**
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- * The temperature (in Kelvin) at which NMR data were
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+ * The temperature (in kelvin) at which NMR data were
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* collected.
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*/
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readonly temperature?: Maybe<Scalars['String']>;
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@@ -4453,7 +4500,7 @@ export type PdbxPrdAudit = {
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* An identifier for the wwPDB site creating or modifying the molecule.
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*
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* Allowable values:
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- * BMRB, PDBC, PDBJ, PDBe, RCSB
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+ * BMRB, PDBC, PDBE, PDBJ, RCSB
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*
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*/
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readonly processing_site?: Maybe<Scalars['String']>;
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@@ -6817,7 +6864,7 @@ export type Query = {
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readonly assemblies?: Maybe<ReadonlyArray<Maybe<CoreAssembly>>>;
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/** Get an assembly given the PDB ID and ASSEMBLY ID. Here ASSEMBLY ID is '1', '2', '3', etc. or 'deposited' for deposited coordinates. */
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readonly assembly?: Maybe<CoreAssembly>;
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- /** Get a list of PDB branched entities given a list of ENTITY IDs. Here ENTITY ID is a compound identifier that includes entry_id and entity_id separated by '_', e.g. 1XXX_1. */
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+ /** Get a list of PDB branched entities given a list of ENTITY IDs. Here ENTITY ID is a compound identifier that includes entry_id and entity_id separated by '_', e.g. 1XXX_1. Note that the ENTRY ID part must be upper case. */
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readonly branched_entities?: Maybe<ReadonlyArray<Maybe<CoreBranchedEntity>>>;
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/** Get a PDB branched entity, given the PDB ID and ENTITY ID. Here ENTITY ID is a '1', '2', '3', etc. */
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readonly branched_entity?: Maybe<CoreBranchedEntity>;
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@@ -6841,9 +6888,9 @@ export type Query = {
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readonly group_provenance?: Maybe<GroupProvenance>;
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/** Get a pairwise polymeric interface given the PDB ID, ASSEMBLY ID and INTERFACE ID. */
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readonly interface?: Maybe<CoreInterface>;
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- /** Get a list of pairwise polymeric interfaces given a list of INTERFACE IDs. Here INTERFACE ID is a compound identifier that includes entry_id, assembly_id and interface_id e.g. 1XXX-1.1. */
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+ /** Get a list of pairwise polymeric interfaces given a list of INTERFACE IDs. Here INTERFACE ID is a compound identifier that includes entry_id, assembly_id and interface_id e.g. 1XXX-1.1. Note that the ENTRY ID part must be upper case. */
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readonly interfaces?: Maybe<ReadonlyArray<Maybe<CoreInterface>>>;
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- /** Get a list of PDB non-polymer entities given a list of ENTITY IDs. Here ENTITY ID is a compound identifier that includes entry_id and entity_id separated by '_', e.g. 1XXX_1. */
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+ /** Get a list of PDB non-polymer entities given a list of ENTITY IDs. Here ENTITY ID is a compound identifier that includes entry_id and entity_id separated by '_', e.g. 1XXX_1. Note that the ENTRY ID part must be upper case. */
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readonly nonpolymer_entities?: Maybe<ReadonlyArray<Maybe<CoreNonpolymerEntity>>>;
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/** Get a PDB non-polymer entity, given the PDB ID and ENTITY ID. Here ENTITY ID is a '1', '2', '3', etc. */
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readonly nonpolymer_entity?: Maybe<CoreNonpolymerEntity>;
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@@ -6851,7 +6898,7 @@ export type Query = {
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readonly nonpolymer_entity_instance?: Maybe<CoreNonpolymerEntityInstance>;
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/** Get a list of PDB non-polymer entity instances (chains), given the list of ENTITY INSTANCE IDs. Here ENTITY INSTANCE ID identifies structural element in the asymmetric unit, e.g. 'A', 'B', etc. */
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readonly nonpolymer_entity_instances?: Maybe<ReadonlyArray<Maybe<CoreNonpolymerEntityInstance>>>;
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- /** Get a list of PDB polymer entities given a list of ENTITY IDs. Here ENTITY ID is a compound identifier that includes entry_id and entity_id separated by '_', e.g. 1XXX_1. */
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+ /** Get a list of PDB polymer entities given a list of ENTITY IDs. Here ENTITY ID is a compound identifier that includes entry_id and entity_id separated by '_', e.g. 1XXX_1. Note that the ENTRY ID part must be upper case. */
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readonly polymer_entities?: Maybe<ReadonlyArray<Maybe<CorePolymerEntity>>>;
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/** Get a PDB polymer entity, given the PDB ID and ENTITY ID. Here ENTITY ID is a '1', '2', '3', etc. */
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readonly polymer_entity?: Maybe<CorePolymerEntity>;
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@@ -8421,6 +8468,29 @@ export type RcsbClusterMembership = {
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readonly identity?: Maybe<Scalars['Int']>;
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};
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+export type RcsbCompModelProvenance = {
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+ /**
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+ * Entry identifier corresponding to the computed structure model.
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+ *
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+ * Examples:
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|
|
+ * AF-P60325-F1, ma-bak-cepc-0019
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|
|
+ *
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|
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+ */
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+ readonly entry_id: Scalars['String'];
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+ /**
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+ * Source database for the computed structure model.
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+ *
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+ * Allowable values:
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|
|
+ * AlphaFoldDB, ModelArchive
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|
|
+ *
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|
|
+ */
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|
+ readonly source_db?: Maybe<Scalars['String']>;
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|
+ /** Source filename for the computed structure model. */
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+ readonly source_filename?: Maybe<Scalars['String']>;
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|
+ /** Source URL for computed structure model file. */
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|
+ readonly source_url?: Maybe<Scalars['String']>;
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|
|
+};
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+
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|
|
export type RcsbEntityHostOrganism = {
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|
|
/**
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|
|
* The beginning polymer sequence position for the polymer section corresponding
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|
|
@@ -8657,7 +8727,7 @@ export type RcsbEntitySourceOrganism = {
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|
* A code indicating the provenance of the source organism details for the entity
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|
|
*
|
|
|
* Allowable values:
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|
- * PDB Primary Data
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|
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+ * PDB Primary Data, UniProt
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|
|
*
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|
|
*/
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|
|
readonly provenance_source?: Maybe<Scalars['String']>;
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|
|
@@ -8731,7 +8801,7 @@ export type RcsbEntryContainerIdentifiers = {
|
|
|
* Entry identifier for the container.
|
|
|
*
|
|
|
* Examples:
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|
|
- * 1KIP, 4HHB
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|
|
+ * 4HHB, AF_AFP60325F1, MA_MABAKCEPC0019
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|
|
*
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|
|
*/
|
|
|
readonly entry_id: Scalars['String'];
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|
|
@@ -8879,6 +8949,15 @@ export type RcsbEntryInfo = {
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|
|
*
|
|
|
*/
|
|
|
readonly na_polymer_entity_types?: Maybe<Scalars['String']>;
|
|
|
+ /**
|
|
|
+ * This data item identifies secondary structure
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|
|
+ * features of nucleic acids in the entry.
|
|
|
+ *
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|
|
+ * Allowable values:
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|
|
+ * a-form double helix, b-form double helix, bulge loop, double helix, four-way junction, hairpin loop, internal loop, mismatched base pair, other right-handed double helix, parallel strands, quadruple helix, tetraloop, three-way junction, triple helix, two-way junction, z-form double helix
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|
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+ *
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|
|
+ */
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|
|
+ readonly ndb_struct_conf_na_feature_combined?: Maybe<ReadonlyArray<Maybe<Scalars['String']>>>;
|
|
|
/** Bound nonpolymer components in this entry. */
|
|
|
readonly nonpolymer_bound_components?: Maybe<ReadonlyArray<Maybe<Scalars['String']>>>;
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|
|
/** The number of distinct non-polymer entities in the structure entry exclusive of solvent. */
|
|
|
@@ -8955,6 +9034,21 @@ export type RcsbEntryInfo = {
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|
|
readonly software_programs_combined?: Maybe<ReadonlyArray<Maybe<Scalars['String']>>>;
|
|
|
/** The number of distinct solvent entities per deposited structure model. */
|
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readonly solvent_entity_count?: Maybe<Scalars['Int']>;
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+ /**
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+ * Indicates if the structure was determined using experimental or computational methods.
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+ *
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+ * Allowable values:
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+ * computational, experimental
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+ *
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+ */
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+ readonly structure_determination_methodology: Scalars['String'];
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+ /**
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+ * Indicates the priority of the value in _rcsb_entry_info.structure_determination_methodology.
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+ * The lower the number the higher the priority.
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+ * Priority values for "experimental" structures is currently set to 10 and
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+ * the values for "computational" structures is set to 100.
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+ */
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+ readonly structure_determination_methodology_priority?: Maybe<Scalars['Int']>;
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};
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export type RcsbEntryInfoDiffrnResolutionHigh = {
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@@ -9294,6 +9388,49 @@ export type RcsbLigandNeighbors = {
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readonly seq_id?: Maybe<Scalars['Int']>;
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};
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+export type RcsbMaQaMetricGlobal = {
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+ readonly ma_qa_metric_global?: Maybe<ReadonlyArray<Maybe<RcsbMaQaMetricGlobalMaQaMetricGlobal>>>;
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+ /** The model identifier. */
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+ readonly model_id: Scalars['Int'];
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+};
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+
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+export type RcsbMaQaMetricGlobalMaQaMetricGlobal = {
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+ /**
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+ * Description of the global QA metric.
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+ *
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+ * Examples:
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+ * confidence score predicting accuracy according to the CA-only Local Distance Difference Test (lDDT-CA) in [0,100]
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+ *
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+ */
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+ readonly description?: Maybe<Scalars['String']>;
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+ /**
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+ * Name of the global QA metric.
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+ *
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+ * Examples:
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+ * pLDDT
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+ *
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+ */
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+ readonly name: Scalars['String'];
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+ /**
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+ * The type of global QA metric.
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+ *
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+ * Allowable values:
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+ * PAE, contact probability, distance, energy, ipTM, normalized score, other, pLDDT, pLDDT all-atom, pLDDT all-atom in [0,1], pLDDT in [0,1], pTM, zscore
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+ *
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+ */
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+ readonly type: Scalars['String'];
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+ /** Details for other type of global QA metric. */
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+ readonly type_other_details?: Maybe<Scalars['String']>;
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+ /**
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+ * Value of the global QA metric.
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+ *
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+ * Examples:
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+ * null
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+ *
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+ */
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+ readonly value: Scalars['Float'];
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+};
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+
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export type RcsbMembraneLineage = {
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/** Hierarchy depth. */
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readonly depth?: Maybe<Scalars['Int']>;
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@@ -10332,7 +10469,7 @@ export type RcsbPolymerEntityContainerIdentifiersReferenceSequenceIdentifiers =
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* Source of the reference database assignment
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*
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* Allowable values:
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- * PDB, RCSB, SIFTS
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+ * PDB, RCSB, SIFTS, UniProt
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*
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*/
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readonly provenance_source?: Maybe<Scalars['String']>;
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@@ -10737,7 +10874,7 @@ export type RcsbPolymerInstanceFeature = {
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* A type or category of the feature.
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*
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* Allowable values:
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- * ANGLE_OUTLIER, BINDING_SITE, BOND_OUTLIER, C-MANNOSYLATION_SITE, CATH, CIS-PEPTIDE, ECOD, HELIX_P, MEMBRANE_SEGMENT, MOGUL_ANGLE_OUTLIER, MOGUL_BOND_OUTLIER, N-GLYCOSYLATION_SITE, O-GLYCOSYLATION_SITE, RAMACHANDRAN_OUTLIER, ROTAMER_OUTLIER, RSCC_OUTLIER, RSRZ_OUTLIER, S-GLYCOSYLATION_SITE, SABDAB_ANTIBODY_HEAVY_CHAIN_SUBCLASS, SABDAB_ANTIBODY_LIGHT_CHAIN_SUBCLASS, SABDAB_ANTIBODY_LIGHT_CHAIN_TYPE, SCOP, SCOP2B_SUPERFAMILY, SCOP2_FAMILY, SCOP2_SUPERFAMILY, SHEET, STEREO_OUTLIER, UNASSIGNED_SEC_STRUCT, UNOBSERVED_ATOM_XYZ, UNOBSERVED_RESIDUE_XYZ, ZERO_OCCUPANCY_ATOM_XYZ, ZERO_OCCUPANCY_RESIDUE_XYZ, ASA
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+ * ANGLE_OUTLIER, BEND, BINDING_SITE, BOND_OUTLIER, C-MANNOSYLATION_SITE, CATH, CIS-PEPTIDE, ECOD, HELIX_P, HELX_LH_PP_P, HELX_RH_3T_P, HELX_RH_AL_P, HELX_RH_PI_P, MA_QA_METRIC_LOCAL_TYPE_CONTACT_PROBABILITY, MA_QA_METRIC_LOCAL_TYPE_DISTANCE, MA_QA_METRIC_LOCAL_TYPE_ENERGY, MA_QA_METRIC_LOCAL_TYPE_IPTM, MA_QA_METRIC_LOCAL_TYPE_NORMALIZED_SCORE, MA_QA_METRIC_LOCAL_TYPE_OTHER, MA_QA_METRIC_LOCAL_TYPE_PAE, MA_QA_METRIC_LOCAL_TYPE_PLDDT, MA_QA_METRIC_LOCAL_TYPE_PLDDT_ALL-ATOM, MA_QA_METRIC_LOCAL_TYPE_PLDDT_ALL-ATOM_[0,1], MA_QA_METRIC_LOCAL_TYPE_PLDDT_[0,1], MA_QA_METRIC_LOCAL_TYPE_PTM, MA_QA_METRIC_LOCAL_TYPE_ZSCORE, MEMBRANE_SEGMENT, MOGUL_ANGLE_OUTLIER, MOGUL_BOND_OUTLIER, N-GLYCOSYLATION_SITE, O-GLYCOSYLATION_SITE, RAMACHANDRAN_OUTLIER, ROTAMER_OUTLIER, RSCC_OUTLIER, RSRZ_OUTLIER, S-GLYCOSYLATION_SITE, SABDAB_ANTIBODY_HEAVY_CHAIN_SUBCLASS, SABDAB_ANTIBODY_LIGHT_CHAIN_SUBCLASS, SABDAB_ANTIBODY_LIGHT_CHAIN_TYPE, SCOP, SCOP2B_SUPERFAMILY, SCOP2_FAMILY, SCOP2_SUPERFAMILY, SHEET, STEREO_OUTLIER, STRN, TURN_TY1_P, UNASSIGNED_SEC_STRUCT, UNOBSERVED_ATOM_XYZ, UNOBSERVED_RESIDUE_XYZ, ZERO_OCCUPANCY_ATOM_XYZ, ZERO_OCCUPANCY_RESIDUE_XYZ, ASA
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*
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*/
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readonly type?: Maybe<Scalars['String']>;
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@@ -10748,7 +10885,7 @@ export type RcsbPolymerInstanceFeatureAdditionalProperties = {
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* The additional property name.
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*
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* Allowable values:
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- * CATH_DOMAIN_ID, CATH_NAME, ECOD_DOMAIN_ID, ECOD_FAMILY_NAME, OMEGA_ANGLE, PARTNER_ASYM_ID, PARTNER_BOND_DISTANCE, PARTNER_COMP_ID, SCOP2_DOMAIN_ID, SCOP2_FAMILY_ID, SCOP2_FAMILY_NAME, SCOP2_SUPERFAMILY_ID, SCOP2_SUPERFAMILY_NAME, SCOP_DOMAIN_ID, SCOP_NAME, SCOP_SUN_ID, SHEET_SENSE
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+ * CATH_DOMAIN_ID, CATH_NAME, ECOD_DOMAIN_ID, ECOD_FAMILY_NAME, MODELCIF_MODEL_ID, OMEGA_ANGLE, PARTNER_ASYM_ID, PARTNER_BOND_DISTANCE, PARTNER_COMP_ID, SCOP2_DOMAIN_ID, SCOP2_FAMILY_ID, SCOP2_FAMILY_NAME, SCOP2_SUPERFAMILY_ID, SCOP2_SUPERFAMILY_NAME, SCOP_DOMAIN_ID, SCOP_NAME, SCOP_SUN_ID, SHEET_SENSE
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*
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|
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*/
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readonly name?: Maybe<Scalars['String']>;
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@@ -10818,7 +10955,7 @@ export type RcsbPolymerInstanceFeatureSummary = {
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* Type or category of the feature.
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*
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* Allowable values:
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- * ANGLE_OUTLIER, BINDING_SITE, BOND_OUTLIER, C-MANNOSYLATION_SITE, CATH, CIS-PEPTIDE, ECOD, HELIX_P, MEMBRANE_SEGMENT, MOGUL_ANGLE_OUTLIER, MOGUL_BOND_OUTLIER, N-GLYCOSYLATION_SITE, O-GLYCOSYLATION_SITE, RAMACHANDRAN_OUTLIER, ROTAMER_OUTLIER, RSCC_OUTLIER, RSRZ_OUTLIER, S-GLYCOSYLATION_SITE, SABDAB_ANTIBODY_HEAVY_CHAIN_SUBCLASS, SABDAB_ANTIBODY_LIGHT_CHAIN_SUBCLASS, SABDAB_ANTIBODY_LIGHT_CHAIN_TYPE, SAbDab Antibody Heavy Chain Subclass, SAbDab Antibody Light Chain Subclass, SAbDab Antibody Light Chain Type, SCOP, SCOP2 Family, SCOP2 Superfamily, SCOP2B Superfamily, SCOP2B_SUPERFAMILY, SCOP2_FAMILY, SCOP2_SUPERFAMILY, SHEET, STEREO_OUTLIER, UNASSIGNED_SEC_STRUCT, UNOBSERVED_ATOM_XYZ, UNOBSERVED_RESIDUE_XYZ, ZERO_OCCUPANCY_ATOM_XYZ, ZERO_OCCUPANCY_RESIDUE_XYZ
|
|
|
+ * ANGLE_OUTLIER, BEND, BINDING_SITE, BOND_OUTLIER, C-MANNOSYLATION_SITE, CATH, CIS-PEPTIDE, ECOD, HELIX_P, HELX_LH_PP_P, HELX_RH_3T_P, HELX_RH_AL_P, HELX_RH_PI_P, MA_QA_METRIC_LOCAL_TYPE_CONTACT_PROBABILITY, MA_QA_METRIC_LOCAL_TYPE_DISTANCE, MA_QA_METRIC_LOCAL_TYPE_ENERGY, MA_QA_METRIC_LOCAL_TYPE_IPTM, MA_QA_METRIC_LOCAL_TYPE_NORMALIZED_SCORE, MA_QA_METRIC_LOCAL_TYPE_OTHER, MA_QA_METRIC_LOCAL_TYPE_PAE, MA_QA_METRIC_LOCAL_TYPE_PLDDT, MA_QA_METRIC_LOCAL_TYPE_PLDDT_ALL-ATOM, MA_QA_METRIC_LOCAL_TYPE_PLDDT_ALL-ATOM_[0,1], MA_QA_METRIC_LOCAL_TYPE_PLDDT_[0,1], MA_QA_METRIC_LOCAL_TYPE_PTM, MA_QA_METRIC_LOCAL_TYPE_ZSCORE, MEMBRANE_SEGMENT, MOGUL_ANGLE_OUTLIER, MOGUL_BOND_OUTLIER, N-GLYCOSYLATION_SITE, O-GLYCOSYLATION_SITE, RAMACHANDRAN_OUTLIER, ROTAMER_OUTLIER, RSCC_OUTLIER, RSRZ_OUTLIER, S-GLYCOSYLATION_SITE, SABDAB_ANTIBODY_HEAVY_CHAIN_SUBCLASS, SABDAB_ANTIBODY_LIGHT_CHAIN_SUBCLASS, SABDAB_ANTIBODY_LIGHT_CHAIN_TYPE, SCOP, SCOP2B_SUPERFAMILY, SCOP2_FAMILY, SCOP2_SUPERFAMILY, SHEET, STEREO_OUTLIER, STRN, TURN_TY1_P, UNASSIGNED_SEC_STRUCT, UNOBSERVED_ATOM_XYZ, UNOBSERVED_RESIDUE_XYZ, ZERO_OCCUPANCY_ATOM_XYZ, ZERO_OCCUPANCY_RESIDUE_XYZ
|
|
|
*
|
|
|
*/
|
|
|
readonly type?: Maybe<Scalars['String']>;
|
|
|
@@ -13377,6 +13514,11 @@ export type ReflnsShell = {
|
|
|
};
|
|
|
|
|
|
export type Software = {
|
|
|
+ /**
|
|
|
+ * This data item is a pointer to _citation.id in the CITATION
|
|
|
+ * category.
|
|
|
+ */
|
|
|
+ readonly citation_id?: Maybe<Scalars['String']>;
|
|
|
/**
|
|
|
* The classification of the program according to its
|
|
|
* major function.
|
|
|
@@ -13527,6 +13669,37 @@ export type Struct = {
|
|
|
readonly title?: Maybe<Scalars['String']>;
|
|
|
};
|
|
|
|
|
|
+export type StructAsym = {
|
|
|
+ /**
|
|
|
+ * This data item is a pointer to _atom_site.pdbx_PDB_strand_id the
|
|
|
+ * ATOM_SITE category.
|
|
|
+ *
|
|
|
+ * Examples:
|
|
|
+ * 1ABC
|
|
|
+ *
|
|
|
+ */
|
|
|
+ readonly pdbx_PDB_id?: Maybe<Scalars['String']>;
|
|
|
+ /**
|
|
|
+ * This data item is a pointer to _atom_site.ndb_alias_strand_id the
|
|
|
+ * ATOM_SITE category.
|
|
|
+ */
|
|
|
+ readonly pdbx_alt_id?: Maybe<Scalars['String']>;
|
|
|
+ /**
|
|
|
+ * This data item gives the order of the structural elements in the
|
|
|
+ * ATOM_SITE category.
|
|
|
+ */
|
|
|
+ readonly pdbx_order?: Maybe<Scalars['Int']>;
|
|
|
+ /**
|
|
|
+ * This data item describes the general type of the structural elements
|
|
|
+ * in the ATOM_SITE category.
|
|
|
+ *
|
|
|
+ * Allowable values:
|
|
|
+ * ATOMN, ATOMP, ATOMS, HETAC, HETAD, HETAI, HETAIN, HETAS, HETIC
|
|
|
+ *
|
|
|
+ */
|
|
|
+ readonly pdbx_type?: Maybe<Scalars['String']>;
|
|
|
+};
|
|
|
+
|
|
|
export type StructKeywords = {
|
|
|
/**
|
|
|
* Terms characterizing the macromolecular structure.
|
Alexander Rose