Unit | @rcsb/rcsb-saguaro-3d

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Classes

Interfaces

Base

Type aliases

Functions

Type aliases

SymmetryGroup

SymmetryGroup: { elements: <internal>.Set; hashCode: number; transformHash: number; unitIndexMap: IntMap<number>; units: ReadonlyArray<<internal>.Unit> }

A group of units that differ only by symmetry operators.

Type declaration

Readonly elements: <internal>.Set
Readonly hashCode: number

Hash based on unit.invariantId which is the same for all units in the group
Readonly transformHash: number

Hash based on all unit.id values in the group, reflecting the units transformation
Readonly unitIndexMap: IntMap<number>

Maps unit.id to index of unit in units array
Readonly units: ReadonlyArray<<internal>.Unit>

Traits

Traits: BitFlags<Trait>

Functions

SymmetryGroup

SymmetryGroup(units: <internal>.Unit[]): { elements: <internal>.Set; hashCode: number; transformHash: number; unitIndexMap: IntMap<number>; units: <internal>.Unit[] }

- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:48
Parameters
- units: <internal>.Unit[]
Returns { elements: <internal>.Set; hashCode: number; transformHash: number; unitIndexMap: IntMap<number>; units: <internal>.Unit[] }
- elements: <internal>.Set
- hashCode: number
- transformHash: number
- Readonly unitIndexMap: IntMap<number>
- units: <internal>.Unit[]

areConformationsEqual

areConformationsEqual(a: <internal>.Unit, b: <internal>.Unit): boolean

- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:185
Parameters
- a: <internal>.Unit
- b: <internal>.Unit
Returns boolean

areOperatorsEqual

areOperatorsEqual(a: <internal>.Unit, b: <internal>.Unit): boolean

- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:184
Parameters
- a: <internal>.Unit
- b: <internal>.Unit
Returns boolean

areSameChainOperatorGroup

areSameChainOperatorGroup(a: <internal>.Unit, b: <internal>.Unit): boolean

- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:183
Parameters
- a: <internal>.Unit
- b: <internal>.Unit
Returns boolean

conformationId

conformationId(unit: <internal>.Unit): "/Users/joan/devel/rcsb-saguaro-3d/node_modules/molstar/lib/mol-util/uuid"

- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:59
Parameters
- unit: <internal>.Unit
Returns "/Users/joan/devel/rcsb-saguaro-3d/node_modules/molstar/lib/mol-util/uuid"

create

create<K>(id: number, invariantId: number, chainGroupId: number, traits: <internal>.Unit.Traits, kind: <internal>.Unit.Kind, model: <internal>.Model, operator: SymmetryOperator, elements: <internal>.Set, props?: K extends Atomic ? <internal>.AtomicProperties : <internal>.CoarseProperties): <internal>.Unit

- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:36
Type parameters
- K: <internal>.Unit.Kind
Parameters
- id: number
- invariantId: number
- chainGroupId: number
- traits: <internal>.Unit.Traits
- kind: <internal>.Unit.Kind
- model: <internal>.Model
- operator: SymmetryOperator
- elements: <internal>.Set
- Optional props: K extends Atomic ? <internal>.AtomicProperties : <internal>.CoarseProperties
Returns <internal>.Unit

hashUnit

hashUnit(u: <internal>.Unit): number

- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:60
Parameters
- u: <internal>.Unit
Returns number

isAtomic

isAtomic(u: <internal>.Unit): u is <internal>.Unit.Atomic

- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:32
Parameters
- u: <internal>.Unit
Returns u is <internal>.Unit.Atomic

isCoarse

isCoarse(u: <internal>.Unit): u is <internal>.Unit.Spheres | Gaussians

- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:33
Parameters
- u: <internal>.Unit
Returns u is <internal>.Unit.Spheres | Gaussians

isGaussians

isGaussians(u: <internal>.Unit): u is Gaussians

- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:35
Parameters
- u: <internal>.Unit
Returns u is Gaussians

isSameConformation

isSameConformation(u: <internal>.Unit, model: <internal>.Model): boolean

- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:186
Parameters
- u: <internal>.Unit
- model: <internal>.Model
Returns boolean

isSpheres

isSpheres(u: <internal>.Unit): u is <internal>.Unit.Spheres

- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:34
Parameters
- u: <internal>.Unit
Returns u is <internal>.Unit.Spheres

Index

Namespaces

Enumerations

Classes

Interfaces

Type aliases

Functions

Type aliases

SymmetryGroup

Type declaration

Readonly elements: <internal>.Set

Readonly hashCode: number

Readonly transformHash: number

Readonly unitIndexMap: IntMap<number>

Readonly units: ReadonlyArray<<internal>.Unit>

Traits

Functions

SymmetryGroup

Parameters

units: <internal>.Unit[]

Returns { elements: <internal>.Set; hashCode: number; transformHash: number; unitIndexMap: IntMap<number>; units: <internal>.Unit[] }

elements: <internal>.Set

hashCode: number

transformHash: number

Readonly unitIndexMap: IntMap<number>

units: <internal>.Unit[]

areConformationsEqual

Parameters

a: <internal>.Unit

b: <internal>.Unit

Returns boolean

areOperatorsEqual

Parameters

a: <internal>.Unit

b: <internal>.Unit

Returns boolean

areSameChainOperatorGroup

Parameters

a: <internal>.Unit

b: <internal>.Unit

Returns boolean

conformationId

Parameters

unit: <internal>.Unit

Returns "/Users/joan/devel/rcsb-saguaro-3d/node_modules/molstar/lib/mol-util/uuid"

create

Type parameters

K: <internal>.Unit.Kind

Parameters

id: number

invariantId: number

chainGroupId: number

traits: <internal>.Unit.Traits

kind: <internal>.Unit.Kind

model: <internal>.Model

operator: SymmetryOperator

elements: <internal>.Set

Optional props: K extends Atomic ? <internal>.AtomicProperties : <internal>.CoarseProperties

Returns <internal>.Unit

getConformation

Parameters

u: <internal>.Unit

Returns "/Users/joan/devel/rcsb-saguaro-3d/node_modules/molstar/lib/mol-model/structure/model/properties/atomic" | CoarseSphereConformation | CoarseGaussianConformation

getHierarchy

Parameters

u: <internal>.Unit

Returns "/Users/joan/devel/rcsb-saguaro-3d/node_modules/molstar/lib/mol-model/structure/model/properties/atomic" | CoarseElements

getModelConformationOfKind

Parameters

kind: <internal>.Unit.Kind

model: <internal>.Model

Returns "/Users/joan/devel/rcsb-saguaro-3d/node_modules/molstar/lib/mol-model/structure/model/properties/atomic" | CoarseSphereConformation | CoarseGaussianConformation

getModelHierarchyOfKind

Parameters

kind: <internal>.Unit.Kind

model: <internal>.Model

Returns "/Users/joan/devel/rcsb-saguaro-3d/node_modules/molstar/lib/mol-model/structure/model/properties/atomic" | CoarseElements

hashUnit

Parameters

u: <internal>.Unit