Class Coarse<K, C>

Index

Constructors

constructor

Properties

chainGroupId coarseConformation coarseElements conformation elements getCoarseConformation id invariantId kind model objectPrimitive props traits

Accessors

boundary gapElements lookup3d polymerElements principalAxes

Methods

applyOperator getChild remapModel

Constructors

constructor

new Coarse<K, C>(id: number, invariantId: number, chainGroupId: number, traits: <internal>.Unit.Traits, model: <internal>.Model, kind: K, elements: <internal>.Set, conformation: ArrayMapping<<internal>.ElementIndex>, props: <internal>.CoarseProperties): Coarse<K, C>
Type Parameters
- K extends Spheres | Gaussians
- C extends CoarseSphereConformation | CoarseGaussianConformation
Parameters
- id: number
- invariantId: number
- chainGroupId: number
- traits: <internal>.Unit.Traits
- model: <internal>.Model
- kind: K
- elements: <internal>.Set
- conformation: ArrayMapping<<internal>.ElementIndex>
- props: <internal>.CoarseProperties
Returns Coarse<K, C>
- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:174

Properties

`Readonly` chainGroupId

chainGroupId: number

`Readonly` coarseConformation

coarseConformation: C

`Readonly` coarseElements

coarseElements: CoarseElements

`Readonly` conformation

conformation: ArrayMapping<<internal>.ElementIndex>

`Readonly` elements

elements: <internal>.Set

`Private` getCoarseConformation

getCoarseConformation: any

`Readonly` id

id: number

`Readonly` invariantId

invariantId: number

invariant ID stays the same even if the Operator/conformation changes.

`Readonly` kind

kind: K

`Readonly` model

model: <internal>.Model

`Readonly` objectPrimitive

objectPrimitive: "sphere" | "gaussian"

From mmCIF/IHM schema: _ihm_model_representation_details.model_object_primitive.

`Readonly` props

props: <internal>.CoarseProperties

`Readonly` traits

traits: <internal>.Unit.Traits

Accessors

boundary

get boundary(): Boundary
Returns Boundary
Implementation of Base.boundary
- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:168

gapElements

get gapElements(): SortedArray<<internal>.ElementIndex>
Returns SortedArray<<internal>.ElementIndex>
Implementation of Base.gapElements
- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:172

lookup3d

get lookup3d(): Lookup3D<UnitIndex>
Returns Lookup3D<UnitIndex>
Implementation of Base.lookup3d
- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:169

polymerElements

get polymerElements(): SortedArray<<internal>.ElementIndex>
Returns SortedArray<<internal>.ElementIndex>
Implementation of Base.polymerElements
- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:171

principalAxes

get principalAxes(): PrincipalAxes
Returns PrincipalAxes
- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:170

Methods

applyOperator

applyOperator(id: number, operator: SymmetryOperator, dontCompose?: boolean): <internal>.Unit
Parameters
- id: number
- operator: SymmetryOperator
- Optional dontCompose: boolean
Returns <internal>.Unit
Implementation of Base.applyOperator
- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:166

getChild

getChild(elements: <internal>.Set): <internal>.Unit
Parameters
- elements: <internal>.Set
Returns <internal>.Unit
Implementation of Base.getChild
- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:165

remapModel

remapModel(model: <internal>.Model, dynamicBonds: boolean, props?: <internal>.CoarseProperties): <internal>.Unit.Spheres | Gaussians
Parameters
- model: <internal>.Model
- dynamicBonds: boolean
- Optional props: <internal>.CoarseProperties
Returns <internal>.Unit.Spheres | Gaussians
Implementation of Base.remapModel
- Defined in node_modules/molstar/lib/mol-model/structure/structure/unit.d.ts:167

Class Coarse<K, C>

Type Parameters

K extends Gaussians | Spheres

C extends CoarseSphereConformation | CoarseGaussianConformation

Hierarchy

Implements

Index

Constructors

Properties

Accessors

Methods

Constructors

constructor

Type Parameters

K extends Spheres | Gaussians

C extends CoarseSphereConformation | CoarseGaussianConformation

Parameters

id: number

invariantId: number

chainGroupId: number

traits: <internal>.Unit.Traits

model: <internal>.Model

kind: K

elements: <internal>.Set

conformation: ArrayMapping<<internal>.ElementIndex>

props: <internal>.CoarseProperties

Returns Coarse<K, C>

Properties

Readonly chainGroupId

Readonly coarseConformation

Readonly coarseElements

Readonly conformation

Readonly elements

Private getCoarseConformation

Readonly id

Readonly invariantId

Readonly kind

Readonly model

Readonly objectPrimitive

Readonly props

Readonly traits

Accessors

boundary

Returns Boundary

gapElements

Returns SortedArray<<internal>.ElementIndex>

lookup3d

Returns Lookup3D<UnitIndex>

polymerElements

Returns SortedArray<<internal>.ElementIndex>

principalAxes

Returns PrincipalAxes

Methods

applyOperator

Parameters

id: number

operator: SymmetryOperator

Optional dontCompose: boolean

Returns <internal>.Unit

getChild

Parameters

elements: <internal>.Set

Returns <internal>.Unit

remapModel

Parameters

model: <internal>.Model

dynamicBonds: boolean

Optional props: <internal>.CoarseProperties

Returns <internal>.Unit.Spheres | Gaussians

Settings

Member Visibility

Theme

`Readonly` chainGroupId

`Readonly` coarseConformation

`Readonly` coarseElements

`Readonly` conformation

`Readonly` elements

`Private` getCoarseConformation

`Readonly` id

`Readonly` invariantId

`Readonly` kind

`Readonly` model

`Readonly` objectPrimitive

`Readonly` props

`Readonly` traits

`Optional` dontCompose: boolean

`Optional` props: <internal>.CoarseProperties