RCSB Mol* Changelog
Semantic Versioning
[2.0.7] - 2022-01-13
General
- Update links to new Mol* organization
[2.0.6] - 2022-01-10
Breaking Internal Change
- Remove
PLDDTConfidenceScore in favor of impl from parent project
[2.0.5] - 2022-01-10
General
[2.0.4] - 2022-01-03
General
Bug fixes
- Show downloaded structures with default/auto representation
[2.0.3] - 2021-12-20
General
- Hide unusable Animate State Snapshots option
[2.0.2] - 2021-12-16
General
[2.0.1] - 2021-12-07
Bug fixes
- fix typo in pLDDT behavior name
[2.0.0] - 2021-12-07
Breaking changes
loadStructureFromData() is not async anymore- Replaced
getPlugin() by plugin() getter
- Signature changes to
setFocus(), select(), clearSelection(), and createComponent()
- Effectively the overloaded methods were replaced by ones that use
Target objects to reference residues/ranges
- Merged
Range into Target
- 'CIF' fields are now represented as camelCase (
label_asym_id to labelAsymId)
- Renamed
label_seq_id to labelSeqRange (if referring to a range and not a single residue)
ColorProp and PropsetProps now use Target
positions and selection props renamed to targets of type Target[]
- Changed loading methods signature
- Added optional configuration parameter
config?: {props?: PresetProps; matrix?: Mat4; reprProvider?: TrajectoryHierarchyPresetProvider, params?: P}
- The loading configuration includes an optional trajectory preset provider
TrajectoryHierarchyPresetProvider
- Remove
alignMotif methods (& pecos-integration) as the strucmotif service now reports RMSD and transformations for all hits
Bug fixes
- Support multiple chains in pLDDT confidence coloring
[1.10.1] - 2021-11-30
General
[1.10.0] - 2021-11-22
Added
- Dedicated UI for quality assessment & validation reports
[1.9.6] - 2021-11-16
General
- Try to fix packing issues
[1.9.5] - 2021-11-16
General
- Mol* 2.3.7 (more WebGL fixes)
[1.9.4] - 2021-11-02
General
- Mol* 2.3.5 and other dependencies (iOS WebGL fixes)
[1.9.3] - 2021-10-18
Bug fixes
- Rewire index parameter of symmetry preset
[1.9.2] - 2021-10-15
Bug fixes
- removed implicit 'chain-mode', must be explicitly requested by setting 'extendToChain' to true as part of the part
[1.9.1] - 2021-10-14
Bug fixes
- More robust 'chain-mode' check in feature preset
- Don't expand MP4 export controls as part of the symmetry preset
[1.9.0] - 2021-09-29
Added
- Integrate PDBe/AlphaFold confidence coloring theme
[1.8.8] - 2021-09-28
General
[1.8.7] - 2021-08-25
General
[1.8.6] - 2021-08-23
General
- Display warning if membrane preset calculation fails
- Add fallback if membrane preset calculation fails
[1.8.5] - 2021-08-11
General
- Update strucmotif integration with rcsb.org
[1.8.4] - 2021-08-03
General
- Mol* 2.2.1
- Reset camera for membrane preset
[1.8.3] - 2021-07-23
General
- Rename 'Structural Motif Search' to 'Structure Motif Search'
[1.8.2] - 2021-07-20
Bug fixes
- Post-pare for pecos API changes
[1.8.1] - 2021-07-16
Added
- Prepare for pecos API changes
[1.8.0] - 2021-07-13
Added
- Moved code for motif alignment (i.e., talking to pecos) here
[1.7.4] - 2021-07-12
Bug fixes
- structure selection: handle selection of full chains
[1.7.3] - 2021-07-08
Bug fixes
- Strucmotif: relative URLs when running inside of sierra
[1.7.2] - 2021-07-05
Bug fixes
- Code that determines assemblyId is now aware of label_asym_id
[1.7.1] - 2021-07-02
Bug fixes
- Strucmotif UI now reports chained operators that can be used by sierra/arches/strucmotif
- Motif preset now works if no assemblyId was provided
Breaking Changes
- Rename experimental 'structOperExpression' prop to 'struct_oper_id'
[1.7.0] - 2021-06-24
Added
- Visualize (an arbitrary number of) structural motifs
Bug fixes
- Fix order of operators in strucmotif queries
[1.6.9] - 2021-06-23
Added
- Mol* 2.0.7 & some internal cleanup
[1.6.8] - 2021-06-11
Added
- Hide all but 2Fo-Fc map (RO-2751)
[1.6.6] - 2021-06-08
Added
- Special density preset with 0(-ish) radius for ligands (RO-2751)
[1.6.5] - 2021-06-03
Bug fixes
- Access to maps.rcsb.org via HTTPS
[1.6.4] - 2021-06-02
Added
- Option to show membrane orientation preset
[1.6.3] - 2021-06-01
Bug fixes
- Improve quality of ANVIL prediction
- Improve ANVIL & ASA calculation performance
[1.6.2] - 2021-05-12
Bug fixes
- Clean up viewer init routine
[1.6.1] - 2021-05-04
Bug fixes
- Multiple region selection (only last one was selected) bug fixed
[1.6.0] - 2021-05-03
Viewer class new methods
- Added new methods for selection, creating components and focus
[1.5.1] - 2021-04-30
Bug fixes
- 'Membrane Orientation' preset now honors assembly-ids
[1.5.0] - 2021-04-22
Added
- feature density preset for ligand validation
Bug fixes
- hide 'Membrane Orientation' representation from UI
[1.4.2] - 2021-04-20
Bug fixes
- fix measurement labels
- hide 'Membrane Orientation' preset from UI
[1.4.1] - 2021-04-06
Bug fixes
- structure export: getting transformed data
[1.4.0] - 2021-04-02
Added
- membrane orientation preset by ANVIL
[1.3.5] - 2021-03-25
Bug fixes
- make sure only structure objects are filtered in for export
- do not create unit cell object when alignments are loaded
[1.3.4] - 2021-03-25
Bug fixes
- structure export: getting children for a referenced node correctly
[1.3.3] - 2021-03-24
Bug fixes
[1.3.2] - 2021-03-24
General
- major version update of Mol*
[1.3.1] - 2021-03-11
Bug fixes
[1.3.0] - 2021-03-10
Added
- expose video export option
[1.2.3] - 2021-03-03
Bug fixes
- warn when residues are more than 15 A apart (RO-2597)
[1.2.2] - 2021-02-26
Bug fixes
- switch to 'model' when ligand preset is requested but ligand is not present in assembly '1' - HELP-16678
[1.2.1] - 2021-02-18
Bug fixes
- limit number of exchanges per position
- hide State Tree panel
[1.2.0] - 2021-02-16
General
- structure alignment data visualization
[1.1.0] - 2021-02-08
General
- structural motif search wizard
[1.0.35] - 2021-02-08
General
[1.0.34] - 2021-02-05
General
[1.0.33] - 2021-02-02
General
- let's call this the initial release
