AnnotationTrack | @rcsb/rcsb-saguaro-3d

Hierarchy

AnnotationTrack

Constructors

constructor

new AnnotationTrack(type: string, annotationConfig: RcsbAnnotationConfigInterface, entityInstanceTranslator: PolymerEntityInstanceTranslate): AnnotationTrack

- Defined in node_modules/@rcsb/rcsb-saguaro-app/build/dist/RcsbCollectTools/AnnotationCollector/AnnotationTrack.d.ts:15
Parameters
- type: string
- annotationConfig: RcsbAnnotationConfigInterface
- entityInstanceTranslator: PolymerEntityInstanceTranslate
Returns AnnotationTrack

Properties

Private addAuthorResIds

addAuthorResIds: any

Private addRange

addRange: any

Private Readonly annotationConfig

annotationConfig: any

Private annotationRangeKeys

annotationRangeKeys: any

Private buildRcsbFvTrackDataElement

buildRcsbFvTrackDataElement: any

Private Readonly entityInstanceTranslator

entityInstanceTranslator: any

Private expandValues

expandValues: any

Private isNumericalDisplay

isNumericalDisplay: any

Private Readonly trackElementMap

trackElementMap: any

Private transformToNumerical

transformToNumerical: any

Private Readonly type

type: any

Private valueRange

valueRange: any

Methods

addAll

addAll(trackElementsMap: AnnotationTrack, color?: string): void

- Defined in node_modules/@rcsb/rcsb-saguaro-app/build/dist/RcsbCollectTools/AnnotationCollector/AnnotationTrack.d.ts:29
Parameters
- trackElementsMap: AnnotationTrack
- Optional color: string
Returns void

addFeature

addFeature(ann: { feature: Feature; queryId: string; reference: undefined | SequenceReference; source: Source; targetId: string }, annotationProcessing?: AnnotationProcessingInterface): void

- Defined in node_modules/@rcsb/rcsb-saguaro-app/build/dist/RcsbCollectTools/AnnotationCollector/AnnotationTrack.d.ts:20
Parameters
- ann: { feature: Feature; queryId: string; reference: undefined | SequenceReference; source: Source; targetId: string }
  - feature: Feature
  - queryId: string
  - reference: undefined | SequenceReference
  - source: Source
  - targetId: string
- Optional annotationProcessing: AnnotationProcessingInterface
Returns void

forEach

forEach(f: (ann: RcsbFvTrackDataElementInterface, loc: string) => void): void

- Defined in node_modules/@rcsb/rcsb-saguaro-app/build/dist/RcsbCollectTools/AnnotationCollector/AnnotationTrack.d.ts:28
Parameters
- f: (ann: RcsbFvTrackDataElementInterface, loc: string) => void
  - - (ann: RcsbFvTrackDataElementInterface, loc: string): void
    - Parameters
      - ann: RcsbFvTrackDataElementInterface
      - loc: string
      Returns void
Returns void

getRange

getRange(): { max: number; min: number }

- Defined in node_modules/@rcsb/rcsb-saguaro-app/build/dist/RcsbCollectTools/AnnotationCollector/AnnotationTrack.d.ts:16
Returns { max: number; min: number }
- max: number
- min: number

getTrackProvenance

getTrackProvenance(): Set<string>

- Defined in node_modules/@rcsb/rcsb-saguaro-app/build/dist/RcsbCollectTools/AnnotationCollector/AnnotationTrack.d.ts:30
Returns Set<string>

set

set(loc: string, ann: RcsbFvTrackDataElementInterface): void

- Defined in node_modules/@rcsb/rcsb-saguaro-app/build/dist/RcsbCollectTools/AnnotationCollector/AnnotationTrack.d.ts:31
Parameters
- loc: string
- ann: RcsbFvTrackDataElementInterface
Returns void

size

size(): number

- Defined in node_modules/@rcsb/rcsb-saguaro-app/build/dist/RcsbCollectTools/AnnotationCollector/AnnotationTrack.d.ts:27
Returns number

values

values(): RcsbFvTrackDataElementInterface[]

- Defined in node_modules/@rcsb/rcsb-saguaro-app/build/dist/RcsbCollectTools/AnnotationCollector/AnnotationTrack.d.ts:32
Returns RcsbFvTrackDataElementInterface[]

Hierarchy

Index

Constructors

Properties

Methods

Constructors

constructor

Parameters

type: string

annotationConfig: RcsbAnnotationConfigInterface

entityInstanceTranslator: PolymerEntityInstanceTranslate

Returns AnnotationTrack

Properties

Private addAuthorResIds

Private addRange

Private Readonly annotationConfig

Private annotationRangeKeys

Private buildRcsbFvTrackDataElement

Private Readonly entityInstanceTranslator

Private expandValues

Private isNumericalDisplay

Private Readonly trackElementMap

Private transformToNumerical

Private Readonly type

Private valueRange

Methods

addAll

Parameters

trackElementsMap: AnnotationTrack

Optional color: string

Returns void

addFeature

Parameters

ann: { feature: Feature; queryId: string; reference: undefined | SequenceReference; source: Source; targetId: string }

feature: Feature

queryId: string

reference: undefined | SequenceReference

source: Source

targetId: string

Optional annotationProcessing: AnnotationProcessingInterface

Returns void

forEach

Parameters

f: (ann: RcsbFvTrackDataElementInterface, loc: string) => void

Parameters

ann: RcsbFvTrackDataElementInterface

loc: string

Returns void

Returns void

getRange

Returns { max: number; min: number }

max: number

min: number

getTrackProvenance

Returns Set<string>

set

Parameters

loc: string

ann: RcsbFvTrackDataElementInterface

Returns void

size

Returns number

values

Returns RcsbFvTrackDataElementInterface[]