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  • AtomicIndex

Index

Methods

  • Find element index of an atom on a given residue.

    Parameters

    Returns <internal>.ElementIndex

    index or -1 if the atom is not present.

  • Find element index of any given atom on a given residue.

    Parameters

    Returns <internal>.ElementIndex

    first found index or -1 if none of the given atoms are present.

  • Parameters

    • label_asym_id: string

    Returns <internal>.EntityIndex

    index or -1 if not present.

  • Index of the 1st occurence of this residue. auth_seq_id is used because label_seq_id is undefined for "ligands" in mmCIF.

    Parameters

    Returns <internal>.ResidueIndex

    index or -1 if not present.

  • Parameters

    • label_entity_id: string
    • label_asym_id: string
    • auth_seq_id: number
    • Optional pdbx_PDB_ins_code: string

    Returns <internal>.ResidueIndex

  • Find the residue index where the spefied residue should be inserted to maintain the ordering (entity_id, asym_id, seq_id, ins_code). Useful for determining ranges for sequence-level annotations.

    Parameters

    Returns <internal>.ResidueIndex

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