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  • Em3dReconstruction

Index

Properties

__typename?: "Em3dReconstruction"
actual_pixel_size?: <internal>.Maybe<number>

The actual pixel size of projection set of images.

Examples: null, null

algorithm?: <internal>.Maybe<string>

The algorithm used project from 2D orientations to 3D map.

details?: <internal>.Maybe<string>

Any additional details used in the 3d reconstruction.

Examples: a modified version of SPIDER program was used for the reconstruction

id: string

The value of _em_3d_reconstruction.id must uniquely identify the 3d reconstruction.

image_processing_id: string

Foreign key to the EM_IMAGE_PROCESSING category

magnification_calibration?: <internal>.Maybe<string>

The magnification calibration method for the 3d reconstruction.

Examples: TMV images

method?: <internal>.Maybe<string>

The algorithm method used for the 3d-reconstruction.

Examples: cross-common lines, polar Fourier transform (PFT)

nominal_pixel_size?: <internal>.Maybe<number>

The nominal pixel size of the projection set of images.

Examples: null, null

num_class_averages?: <internal>.Maybe<number>

This item was correspondence to two type of em dataset processing_emDataSet_singleParticle.numClassAverages processing_emDataSet_icosahedral.numClassAverages

num_particles?: <internal>.Maybe<number>

The number of 2D projections or 3D subtomograms used in the 3d reconstruction

refinement_type?: <internal>.Maybe<string>

type of refinement performed in order to determine map resolution

Allowable values: HALF-MAPS REFINED AGAINST SAME DATA, HALF-MAPS REFINED INDEPENDENTLY, HALF-MAPS REFINED INDEPENDENTLY WITH FREQUENCY RANGE OMITTED, HALF-MAPS REFINED WITH FREQUENCY RANGE OMITTED, OTHER

resolution?: <internal>.Maybe<number>

The final resolution (in Angstroms)of the 3D reconstruction.

Examples: null, null

resolution_method?: <internal>.Maybe<string>

The method used to determine the final resolution of the 3d reconstruction. The Fourier Shell Correlation criterion as a measure of resolution is based on the concept of splitting the (2D) data set into two halves; averaging each and comparing them using the Fourier Ring Correlation (FRC) technique.

Examples: FSC at 0.5 cut-off

symmetry_type?: <internal>.Maybe<string>

The type of symmetry applied to the reconstruction

Allowable values: 2D CRYSTAL, 3D CRYSTAL, HELICAL, POINT

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