The common name of the natural organism from which the gene was obtained.
Examples: man, yeast, bacteria
A description of special aspects of the natural organism from which the gene was obtained.
The genus of the natural organism from which the gene was obtained.
Examples: Homo, Saccharomyces, Escherichia
The species of the natural organism from which the gene was obtained.
Examples: sapiens, cerevisiae, coli
The strain of the natural organism from which the gene was obtained, if relevant.
Examples: DH5a, BMH 71-18
The tissue of the natural organism from which the gene was obtained.
Examples: heart, liver, eye lens
The subcellular fraction of the tissue of the natural organism from which the gene was obtained.
Examples: mitochondria, nucleus, membrane
The common name of the organism that served as host for the production of the entity. Where full details of the protein production are available it would be expected that this item be derived from _entity_src_gen_express.host_org_common_name or via _entity_src_gen_express.host_org_tax_id
Examples: yeast, bacteria
A description of special aspects of the organism that served as host for the production of the entity. Where full details of the protein production are available it would be expected that this item would derived from _entity_src_gen_express.host_org_details
The genus of the organism that served as host for the production of the entity.
Examples: Saccharomyces, Escherichia
The species of the organism that served as host for the production of the entity.
Examples: cerevisiae, coli
This data item identifies cases in which an alternative source modeled.
Allowable values: model, sample
The beginning polymer sequence position for the polymer section corresponding to this source.
A reference to the sequence position in the entity_poly category.
Information on the source which is not given elsewhere.
The ending polymer sequence position for the polymer section corresponding to this source.
A reference to the sequence position in the entity_poly category.
American Type Culture Collection tissue culture number.
Examples: 6051
Cell type.
Examples: ENDOTHELIAL
The specific line of cells.
Examples: HELA CELLS
Identifies the location inside (or outside) the cell.
Examples: CYTOPLASM, NUCLEUS
A domain or fragment of the molecule.
Examples: CYTOPLASM, NUCLEUS
Identifies the gene.
NCBI Taxonomy identifier for the gene source organism.
Reference:
Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA (2000). Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2000 Jan 1;28(1):10-4
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL (2000). GenBank. Nucleic Acids Res 2000 Jan 1;28(1):15-18.
Organized group of tissues that carries on a specialized function.
Examples: KIDNEY, LIVER, PANCREAS
Organized structure within cell.
Examples: MITOCHONDRIA
Scientific name of the organism.
Examples: Homo sapiens, Saccharomyces Cerevisiae
Identifies the variant.
Examples: DELTAH1DELTATRP
Americal Tissue Culture Collection of the expression system. Where full details of the protein production are available it would be expected that this item would be derived from _entity_src_gen_express.host_org_culture_collection
Cell type from which the gene is derived. Where entity.target_id is provided this should be derived from details of the target.
Examples: ENDOTHELIAL
A specific line of cells used as the expression system. Where full details of the protein production are available it would be expected that this item would be derived from entity_src_gen_express.host_org_cell_line
Examples: HELA
Identifies the location inside (or outside) the cell which expressed the molecule.
Examples: CYTOPLASM, NUCLEUS
Culture collection of the expression system. Where full details of the protein production are available it would be expected that this item would be derived somehwere, but exactly where is not clear.
Specific gene which expressed the molecule.
Examples: HIV-1 POL, GLNS7, U1A (2-98, Y31H, Q36R)
NCBI Taxonomy identifier for the expression system organism.
Reference:
Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA (2000). Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2000 Jan 1;28(1):10-4
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL (2000). GenBank. Nucleic Acids Res 2000 Jan 1;28(1):15-18.
Specific organ which expressed the molecule.
Examples: KIDNEY
Specific organelle which expressed the molecule.
Examples: MITOCHONDRIA
The scientific name of the organism that served as host for the production of the entity. Where full details of the protein production are available it would be expected that this item would be derived from _entity_src_gen_express.host_org_scientific_name or via _entity_src_gen_express.host_org_tax_id
Examples: ESCHERICHIA COLI, SACCHAROMYCES CEREVISIAE
The strain of the organism in which the entity was expressed.
Examples: AR120
The specific tissue which expressed the molecule. Where full details of the protein production are available it would be expected that this item would be derived from _entity_src_gen_express.host_org_tissue
Examples: heart, liver, eye lens
The fraction of the tissue which expressed the molecule.
Examples: mitochondria, nucleus, membrane
Variant of the organism used as the expression system. Where full details of the protein production are available it would be expected that this item be derived from entity_src_gen_express.host_org_variant or via _entity_src_gen_express.host_org_tax_id
Examples: TRP-LAC, LAMBDA DE3
Identifies the vector used. Where full details of the protein production are available it would be expected that this item would be derived from _entity_src_gen_clone.vector_name.
Examples: PBIT36, PET15B, PUC18
Identifies the type of vector used (plasmid, virus, or cosmid). Where full details of the protein production are available it would be expected that this item would be derived from _entity_src_gen_express.vector_type.
Examples: COSMID, PLASMID
This data item povides additional information about the sequence type.
Allowable values: Biological sequence, C-terminal tag, Linker, N-terminal tag
This data item is an ordinal identifier for entity_src_gen data records.
A description of special aspects of the plasmid that produced the entity in the host organism. Where full details of the protein production are available it would be expected that this item would be derived from _pdbx_construct.details of the construct pointed to from _entity_src_gen_express.plasmid_id.
The name of the plasmid that produced the entity in the host organism. Where full details of the protein production are available it would be expected that this item would be derived from _pdbx_construct.name of the construct pointed to from _entity_src_gen_express.plasmid_id.
Examples: pET3C, pT123sab
Generated using TypeDoc
A unique identifier for the expression system. This should be extracted from a local list of expression systems.