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Hierarchy

  • PdbxSolnScatterModel

Index

Properties

__typename?: "PdbxSolnScatterModel"
conformer_selection_criteria?: <internal>.Maybe<string>

A description of the conformer selection criteria used.

Examples: The modelled scattering curves were assessed by calculation of the RG, RSX-1 and RXS-2 values in the same Q ranges used in the experimental Guinier fits. models were then ranked using a goodness-of-fit R-factor defined by analogy with protein crystallography and based on the experimental curves in the Q range extending to 1.4 nm-1.

details?: <internal>.Maybe<string>

A description of any additional details concerning the experiment.

Examples: Homology models were built for the 17 SCR domains and energy minimisations were performed to improve the connectivity in the fh model. triantennary complex-type carbohydrate structures (MAN3GLCNAC6GAL3FUC3NEUNAC1) were added to each of the N-linked glycosylation sites. a library of linker peptide conformations was used in domain modelling constrained by the solution scattering fits. modelling with the scattering data was also carried out by rotational search methods. the x-ray and neutron scattering curve I(Q) was calculated assuming a uniform scattering density for the spheres using the debye equation as adapted to spheres. x-ray curves were calculated from the hydrated sphere models without corrections for wavelength spread or beam divergence, while these corrections were applied for the neutron curves but now using unhydrated models.

entry_fitting_list?: <internal>.Maybe<string>

A list of the entries used to fit the model to the scattering data

Examples: PDB CODE 1HFI, 1HCC, 1HFH, 1VCC

id: string

The value of _pdbx_soln_scatter_model.id must uniquely identify the sample in the category PDBX_SOLN_SCATTER_MODEL

method?: <internal>.Maybe<string>

A description of the methods used in the modelling

Examples: Constrained scattering fitting of homology models

num_conformers_calculated?: <internal>.Maybe<number>

The number of model conformers calculated.

num_conformers_submitted?: <internal>.Maybe<number>

The number of model conformers submitted in the entry

representative_conformer?: <internal>.Maybe<number>

The index of the representative conformer among the submitted conformers for the entry

scatter_id: string

This data item is a pointer to _pdbx_soln_scatter.id in the PDBX_SOLN_SCATTER category.

software_author_list?: <internal>.Maybe<string>

A list of the software authors

Examples: MSI

software_list?: <internal>.Maybe<string>

A list of the software used in the modeeling

Examples: INSIGHT II, HOMOLOGY, DISCOVERY, BIOPOLYMER, DELPHI

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